YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPCT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESELKDLNS NSNPPSSKED RPLLKSESDL AAAIEELDKK FAPYARTDLY GTMGLGPFPM  60
   61 TENIKLAVAL VTLVPLRFLL SMSILLLYYL ICRVFTLFSA PYRGPEEEED EGGVVFQEDY 120
  121 AHMEGWKRTV IVRSGRFLSR VLLFVFGFYW IHESCPDRDS DMDSNPKTTS TEINQKGEAA 180
  181 TEEPERPGAI VSNHVSYLDI LYHMSASFPS FVAKRSVGKL PLVGLISKCL GCVYVQREAK 240
  241 SPDFKGVSGT VNERVREAHS NKSAPTIMLF PEGTTTNGDY LLTFKTGAFL AGTPVLPVIL 300
  301 KYPYERFSVA WDTISGARHI LFLLCQVVNH LEVIRLPVYY PSQEEKDDPK LYASNVRKLM 360
  361 ATEGNLILSE LGLSDKRIYH ATLNGNLSQT RDFHQKEE

Type	Start	End	Confidence
Cytoplasmic	1	67	0.65
Transmembrane Helix	68	91	0.76
Non-Cytoplasmic	92	398	0.83