YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STML1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRSGYRAL PLGDFDRFQQ SSFGFLGSQK GCLSPEPGSV GPGADAPESW PSCLCHGLVS  60
   61 VLGFLLLLLT FPISGWFALK IVPTYERMIV FRLGRIRNPQ GPGMVLLLPF IDSFQRVDLR 120
  121 TRAFNVPPCK LASKDGAVLS VGADVQFRIW DPVLSVMAVK DLNTATRMTA HNAMTKALLR 180
  181 RPLQEIQMEK LKIGDQLLLE INDVTRAWGL EVDRVELAVE AVLQPPQDSL TVPSLDSTLQ 240
  241 QLALHLLGGS MNSAVGRVPS PGPDTLEMIN EVEPPASLAG AGAEPSPKQP VAEGLLTALQ 300
  301 PFLSEALVSQ VGACYQFNVI LPSGTQSIYF LDLTTGQGRV GHGEPDGIPD VVVEMAEADL 360
  361 QALLSKELRP LGAYMSGRLK VKGDLAVVMK LEAVLKALK

Type	Start	End	Confidence
Cytoplasmic	1	53	0.63
Transmembrane Helix	54	79	0.80
Non-Cytoplasmic	80	399	0.79