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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12734687
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMDTMDTS QSQPMDVAPA VAVAATSGAA LVDFTAAMVS MAATAEAESA ESNNNHIDMA  60
   61 EYKEHRKNKK KKREKREREG KEHRHHKHRD REHREHRRHR DRDRDKERDR EGHHHHPTHH 120
  121 HPNNSQHSTS ASSSPSSAST TPSATIEYVG GSASASPSYL GGGATGTGAA VGATTTYPHN 180
  181 LKIRFLLSGR QRTELSPPTH QTSATAEVNA PLASSTSASI AVTASATAAS APPATGTTTL 240
  241 GSSISGNAGS TSSGNSSGVS ATGGAQSAVG SGGYPKTESS KSSGTASAGS GSGSSSNTSS 300
  301 TKHGSNIKDI SSSSNQQAST ASSSSAPSLY VSVPLSTANV PGINLPTSST SSSTTSESHS 360
  361 ASSRSSGAQS QHQQQLSNAL VGPPMGGSAG AFHGGTTSAG SSSVIQQQSG KSSPALGTLV 420
  421 SGNSGGSIIS ASGFPLPSGN LTATTTESGN LKISYEKQTT RVQQLQEQEA PPARRSRTLD 480
  481 LSTASASSSS PSAVPATTSP LVVLSNQLPL NSVAASSSTG GLKFTYESQT QMDVPMMPVS 540
  541 AIKDSPPSSP GSEIGSAMHS ATTAPGSLTG ASTAATAQPG NVRKRGRKAK DATIAAAAAA 600
  601 AAAAAALSNS QQDLKDVRIL QNGASNTPGN PAGSTPTPPA TPASSNAVSS ASSIITHTAA 660
  661 HMLGNQINPN SSVAQKLSEQ LHMEVQDHSI YTPDSMNSQY AGVPFPGKQR NSTAVPSNAT 720
  721 PAQNPLQSMF SGGGMNGNMP IPQSLEQLLE RQWEQGSQFL MEQAQHFDIA SLLNCLHQLQ 780
  781 SENLRLEEHV TSLIARRDHL LAVNARLQIP LSTIASNTKA EAHGK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle