YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73909060, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	186	0.99
Transmembrane Helix	187	207	0.96
Cytoplasmic	208	250	0.97
Transmembrane Helix	251	273	0.88
Non-Cytoplasmic	274	280	0.73
Transmembrane Helix	281	304	0.88
Cytoplasmic	305	316	0.90
Transmembrane Helix	317	340	0.91
Non-Cytoplasmic	341	347	0.85
Transmembrane Helix	348	367	0.92
Cytoplasmic	368	375	0.83
Transmembrane Helix	376	397	0.91
Non-Cytoplasmic	398	440	0.94
Transmembrane Helix	441	462	0.88
Cytoplasmic	463	470	0.90
Transmembrane Helix	471	493	0.93
Non-Cytoplasmic	494	499	0.83
Transmembrane Helix	500	518	0.91
Cytoplasmic	519	684	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACLGFLLPV GFLLLISTVA GGKYGVAHVV SENWSKDYCI LFSSDYITLP RDLHHAPLLP  60
   61 LYDGTKAPWC PGEDSPHQAQ LRSPSQRPLR QTTAMVMRGN CSFHTKGWLA QGQGAHGLLI 120
  121 VSRVSDQQCS DTTLAPQDPR QPLADLTIPV AMLHYADMLD ILSHTRGEAV VRVAMYAPPE 180
  181 PIIDYNMLVI FILAVGTVAA GGYWAGLTEA NRLQRRRARR GGGSGGHHQL QEAAAAEGAQ 240
  241 KEDNEDIPVD FTPAMTGVVV TLSCSLMLLL YFFYDHFVYV TIGIFGLGAG IGLYSCLSPL 300
  301 VCHLSLRQYQ RPPHSLWASL PLPLLLLASL CATVIIFWVA YRNEDRWAWL LQDTLGISYC 360
  361 LFVLHRVRLP TLKNCSSFLL ALLAFDVFFV FVTPFFTKTG ESIMAQVALG PAESSSHERL 420
  421 PMVLKVPRLR VSALTLCSQP FSILGFGDIV VPGFLVAYCC RFDVQVCSRQ IYFVACTVAY 480
  481 AVGLLVTFMA MVLMQMGQPA LLYLVSSTLL TSLAVAACRQ ELSLFWTGQG RAKMCGLGCA 540
  541 PSAGSRQKQE GAADAHTAST LERGTSRGAG DLDSNPGEDT TEIVTISENE ATNPEDRSDS 600
  601 SEGWSDAHLD PNELPFIPPG ASEELVPLMP MAMLIPLMPL MPPPSELGHV HAQAQAHETG 660
  661 LPWAGLHKRK GLKVRKSMST QAPL