YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12656496
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.54
Transmembrane Helix	6	23	0.83
Cytoplasmic	24	29	0.43
Transmembrane Helix	30	50	0.62
Non-Cytoplasmic	51	71	0.66
Transmembrane Helix	72	101	0.75
Cytoplasmic	102	104	0.40
Transmembrane Helix	105	125	0.69
Non-Cytoplasmic	126	152	0.72
Transmembrane Helix	153	171	0.78
Cytoplasmic	172	183	0.77
Transmembrane Helix	184	203	0.65
Non-Cytoplasmic	204	208	0.51
Transmembrane Helix	209	226	0.30
Cytoplasmic	227	235	0.48
Transmembrane Helix	236	259	0.84
Non-Cytoplasmic	260	270	0.48
Transmembrane Helix	271	289	0.84
Cytoplasmic	290	307	0.55
Transmembrane Helix	308	328	0.95
Non-Cytoplasmic	329	334	0.54
Transmembrane Helix	335	352	0.62
Cytoplasmic	353	365	0.79
Transmembrane Helix	366	390	0.91
Non-Cytoplasmic	391	545	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNIPPAYGLY AAFFPVITYF FLGTSRHISV GPFPVLSMMV GVVVTRVASG SDTSPALSSS  60
   61 SAENDSMIEE KVMVAASVTV LSGIIQLLLG VLQIGFVVIY LSESLISGFT TAAAIHVLVS 120
  121 QLKFMLQLTV PAHSDPFSIF KVLESVFSQI QKTNIADLVT SVIILVVVFV VKEINQRYRS 180
  181 KLPVPIPIEL IMTVIATGIS YGCNFEQRFG VAVVGNMSLG FQPPITPSVE VFQDTIGDCF 240
  241 GIAIVGFAVA FSVASVYSLK YHYPIDGHQE LIALGVSNIF TGAFKGFAGS TALSRSGVQE 300
  301 SXGGKTQVAG LLSAVIVLIV IVAIGFLLQP LQKSVLAALA LGNLKGMLMQ FAEIGRLWKK 360
  361 DKYDCLIWIM TFIFAIVLGL GLGLAASVAF QLLTIVFRTQ FPKCSTLANV GRSNIYKNKK 420
  421 NYADVYEPEG VKIFRCPSPI YFANIGFFKQ KLIDAVGFNP LRILRKRNKA LKKIRKLQKQ 480
  481 GLIQVTPKGF ICTSDGFKDS DEELDNNQIE ELDQPINTTD LPFEIDWNAD LPLNITIPKI 540
  541 SLHSL