YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APG3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSMTTSPT ARAFLHLHSS PFTLRSRKSP SGVCLVSWPP SRSRRTRRLV CMAEPYLIRK  60
   61 MESVEKTWKE LSVKLADPDV VSNQSEYQKL AQSMSELDEV VTVFRRFKDC EKQLLESKVL 120
  121 AKEAGDDEDM AEMIGSEINS LTKEIEELEK QLKVLLLPSD PLDARNILLE VRAGTGGDEA 180
  181 AIWTGDLVRM YQRYSERSSW KFSMVSCSEA EHGGYKTCVM EIKGNRVYSK LKYESGVHRV 240
  241 QRVPQTETQG RVHTSTATVA IMPEADEVEV VIDPKDIELT SARSGGAGGQ NVNKVETAID 300
  301 LFHKPSGIRI FCTEERTQIR NKARAFQLLR AKLYEIKVRE QQEKIRNERK SQVGTGARSE 360
  361 KIRTYNYKDS RVTDHRLKMN FALTTFLDGA LEDAVQACAA LEQKELMEEL SESVAASSAT 420
  421 SG

Type	Start	End	Confidence
Signal Peptide	1	43	0.57
N-region	1	34
H-region	35	40
C-region	41	43
Cleavage Site	43	44
Non-Cytoplasmic	44	422	0.99