YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.93
Transmembrane Helix	70	89	0.49
Non-Cytoplasmic	90	96	0.51
Transmembrane Helix	97	115	0.58
Cytoplasmic	116	125	0.76
Transmembrane Helix	126	146	0.91
Non-Cytoplasmic	147	169	0.86
Transmembrane Helix	170	192	0.89
Cytoplasmic	193	212	0.91
Transmembrane Helix	213	233	0.94
Non-Cytoplasmic	234	240	0.77
Transmembrane Helix	241	262	0.93
Cytoplasmic	263	363	0.97
Transmembrane Helix	364	384	0.86
Non-Cytoplasmic	385	401	0.85
Transmembrane Helix	402	422	0.93
Cytoplasmic	423	441	0.87
Transmembrane Helix	442	463	0.94
Non-Cytoplasmic	464	484	0.90
Transmembrane Helix	485	505	0.90
Cytoplasmic	506	524	0.80
Transmembrane Helix	525	545	0.92
Non-Cytoplasmic	546	567	0.90
Transmembrane Helix	568	587	0.96
Cytoplasmic	588	620	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEDRKDGS SLPGRSGSFS KSSPSELDVV DPYKRISSPG SILDAEKVEK KPGGWRAVSF  60
   61 ILGNETLERL GSIGLLANFM VYLTKVFHLE QVDAANVINI WSGFTNLTPL VGAYISDTYV 120
  121 GRFKTIAFAS FATLLGLITI TLTASFPQLH PASCNSQDPL SCGGPNKLQI GVLLLGLCFL 180
  181 SVGSGGIRPC SIPFGVDQFD QRTEEGVKGV ASFFNWYYMT FTVVLIITQT VVVYIQDQVS 240
  241 WIIGFSIPTG LMALAVVMFF AGMKRYVYVK PEGSIFSGIA QVIVAARKKR KLKLPAEDDG 300
  301 TVTYYDPAIK SSVLSKLHRS NQFRCLDKAA VVIEGDLTPE GPPADKWRLC SVQEVEEVKC 360
  361 LIRIVPIWSA GIISLAAMTT QGTFTVSQAL KMDRNLGPKF EIPAGSLSVI SLLTIGIFLP 420
  421 FYDRVFVPFM RRITGHKSGI TLLQRIGTGI VFAIFSMIVA GIVERMRRIR SINAGDPTGM 480
  481 TPMSVFWLSP QLILMGLCEA FNIIGQIEFF NSQFPEHMRS IANSLFSLSF AGSSYLSSFL 540
  541 VTVVHKFSGG HDRPDWLNKN LNAGKLDYFY YLIAVLGVVN LVYFWYCARG YRYKVGLPIE 600
  601 DFEEDKSSDD VEMTSKKSMK