YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68395260, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	205	0.97
Transmembrane Helix	206	228	0.94
Cytoplasmic	229	239	0.90
Transmembrane Helix	240	260	0.95
Non-Cytoplasmic	261	294	0.93
Transmembrane Helix	295	317	0.85
Cytoplasmic	318	329	0.89
Transmembrane Helix	330	351	0.94
Non-Cytoplasmic	352	375	0.92
Transmembrane Helix	376	399	0.92
Cytoplasmic	400	418	0.95
Transmembrane Helix	419	442	0.89
Non-Cytoplasmic	443	481	0.94
Transmembrane Helix	482	501	0.76
Cytoplasmic	502	685	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLWALCSM LTVCMAINME ATGSHSMFSC EPITLRMCQG LAYNTTFMPN LLNHYDQQTA  60
   61 ALAMEPFHPM VNLECSTEIR PFLCALYAPV CTEYGRVTLP CRRLCQRAKS DCYKLMEMFG 120
  121 VSWPDEMECS RFPECEESYP RAIDLLPSSD STEESPSAVQ RDYGFWCPRE LKIEPDLGYS 180
  181 FMGVRDCSPP CPNMYFRKDE LIFARYFIGV ISIVCLSATL FTFLTFLIDV GRFRYPERPI 240
  241 IFYAVCYMMV SLVFFLGFLL EDRVSCNTAS PGRFRASTIT QGSHNKACTL LFMTLYFFTM 300
  301 AGSVWWVILT ITWFLAAVPK WGSEAIEKKA LLFHAVAWGV PGALTITLMA MNKIEGDSMS 360
  361 GVCFVGLYDL MALRWFLLVP LVLDVIVGVV LLLAGIAALN RVRMEIPLEK ENQDKLVKFM 420
  421 IRIGVFSVLY LVPLLTVIGC YLYEQSHRSV WETTWVQERC REYHIPCPFK VEKTSRPDIA 480
  481 LFLIKYLMML VVGIPSVFWV GSKKTCFEWA SFFSGHRRKD AVHESRQVLQ EPDFTQLLLR 540
  541 DPNTPVVRKS RGTSTQGTST HASSTHLAML DEPPSASTSR AGSTRSKSSS FHGSLHRSRD 600
  601 GRYTASSFRG VEERVSHGSS LRLNEPLQHC AINRLDSQSR HGSLQRLESQ SRHSSVRDLS 660
  661 ITAQAIQSSP GNGIHRVMEE DATKA