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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|21744243
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LARSGHTDGS QINYSHTKSN GHTNGAGGDG DLDGTFRDHP LAQHTKLTTS LTAAGTDDED  60
   61 MIDITPRSSP GDVIGGGGGG GSSSGYHRET ATESDTERDF GHSGGNGGGN HHNQRTMHQH 120
  121 VPTHSAFGDP MDGALSFYGS SDVQDDIPGI GQYEDFHTID WQRDIARDRM RHRYIVKKRQ 180
  181 DSLWDLIKGS IDAGSGWLCV LLVGIAAGCV AGMVDIGASW MSDLKHGICP PAFWFNREQC 240
  241 CYPAKQSVFE EGNCSTWKTW PEIFGLDRNG TGPYIVAYIW YVLWALLFAS LSASLVRMFA 300
  301 PYACGSGIPE IKTILSGFII RGYLGKWTLL IKSVGLMLSV SAGLTLGKEG PMVHIASCIG 360
  361 NIFSHVFPKY GRNEAKKREI LSAAAAAGVS VAFGAPIGGV LFSLEEVSYY FPLKTLWRSF 420
  421 FCALIAAFVL RSLTPFGNEH SVLFFVEYNK PWIFFELIPF VFLGIMGGVI GTFFIKANLW 480
  481 WCRYRKFSKL GQYPVMEVLF VTLVTAIICY PNPFTRMNMN ELIFLLVSKC SPGDVTNPLC 540
  541 DYKRMNITSG NSFIEVTEPG PGVYSSIWLL MLTFILKLAL TIFTFGMKVP AGLFIPSLLL 600
  601 GAIMGRIVGI GVEQFAYSYP NIWFFTGECA DSNLITPGLY AVVGAAAVLG GVTRMTVSLV 660
  661 VIMFELTGGV RYIVPLMAAA MASKWVGDAL GRQGIYDAHI ALNGYPFLDS KEEFAHTTLA 720
  721 ADVMQPKRNE TLNVITQDSM TVDDVENLLK ETEHNGYPVV VSRENQYLVG FVLRRDLNLA 780
  781 IGNAKRLIEG ISSSSIVLFT SSQPIQNLGP QPLKLKKILD MAPITVTDQT PMETVVDMFR 840
  841 KLGLRQTLVT HNGRLLGVIT KKDVLRHVKQ MDNEDPNTVL FN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle