YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFKVNSQL KTVNNYYLLS LAFADLIIGV FSMNLYTCYI LMGYWSLGNT ACDLWLALDY  60
   61 VASNASVMNL LVISFDRYFS ITRPLTYRAK RTPKRAGIMI GMAWLISFIL WAPPILCWQY 120
  121 FVGERKVPLD QCQIQFFSEP IITFGTAIAA FYVPVSIMTI LYCKIYKETE KRTKNLAELQ 180
  181 GYPSLDSQDG PKVRKPILRC FSFKNKRDGT QASWSSSNQS YVTRTTLQSD DLWTKSEQVT 240
  241 TLNSYTSSED DDRSVSESTP RESFKNQEPP VSKNGQLVCY EDSKYLSDLA KCSQTNNKKC 300
  301 LSYKFKPIIS DITVLQGNSE SERANPDQSS DQQAPSSTSS STKPEDPNLK IQMTKRKRMV 360
  361 LIKEKKAAQT LSAILLAFLL TWTPYNIMVL ISTFCSNCIP TSLWQLGYWL CYVNSTVNPM 420
  421 CYALCNKTFQ KTFWMLILCK WKKNRGEEKL YWGGQNH

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	40	0.85
Non-Cytoplasmic	41	55	0.85
Transmembrane Helix	56	79	0.83
Cytoplasmic	80	95	0.93
Transmembrane Helix	96	115	0.91
Non-Cytoplasmic	116	140	0.88
Transmembrane Helix	141	163	0.90
Cytoplasmic	164	366	0.99
Transmembrane Helix	367	388	0.83
Non-Cytoplasmic	389	405	0.71
Transmembrane Helix	406	425	0.57
Cytoplasmic	426	457	0.68