YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21711739
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	95	0.82
Transmembrane Helix	96	111	0.50
Non-Cytoplasmic	112	192	0.64
Transmembrane Helix	193	214	0.85
Cytoplasmic	215	220	0.60
Transmembrane Helix	221	244	0.86
Non-Cytoplasmic	245	254	0.46
Transmembrane Helix	255	273	0.75
Cytoplasmic	274	280	0.40
Transmembrane Helix	281	306	0.85
Non-Cytoplasmic	307	319	0.48
Transmembrane Helix	320	342	0.85
Cytoplasmic	343	349	0.48
Transmembrane Helix	350	372	0.76
Non-Cytoplasmic	373	388	0.50
Transmembrane Helix	389	414	0.84
Cytoplasmic	415	422	0.42
Transmembrane Helix	423	441	0.56
Non-Cytoplasmic	442	444	0.58
Transmembrane Helix	445	465	0.83
Cytoplasmic	466	478	0.94
Transmembrane Helix	479	501	0.86
Non-Cytoplasmic	502	509	0.77
Transmembrane Helix	510	533	0.89
Cytoplasmic	534	547	0.89
Transmembrane Helix	548	567	0.87
Non-Cytoplasmic	568	577	0.79
Transmembrane Helix	578	601	0.72
Cytoplasmic	602	999	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIRTEQDYD SATPALAQQM NLARRACWRI KSYSSESLFK TYASVITDTS ANEIDAEAPP  60
   61 PPRDKTKTRI EPQIAPAKRN SSCTSSDWRG MFSKRTLLIC ALALILGSAQ ARPNTSAVGV 120
  121 APRKVSQDIV DAVTQLNLGQ SAPIDAVDVG LDPTPSARVP RPKPLKSGDE NAKGDEGHKM 180
  181 ERYPLSSVDF ARVKTPFIIG IWILSASIAK IGFHMTPKLH LIFPESCLLI VVGVVIGVVL 240
  241 YFCTDVAVSP LTPNTFFFYM LPPIILDAGY FMPNRLFFDN LGTILLMAVV GTIFNIATIG 300
  301 GSLYACGKMG IYGESETPGL MDVFLFASLI SAVDPVAVLA VFEEIHVNEI LYIVVFGESL 360
  361 LNDAVTVVMY HMMESYNEIG LDKIIAQDIA SGVGSFFVVA LGGTAIGIIW GFLTGLVTRF 420
  421 TDHVRVIEPI FIFVMAYLAY LNAEIFHMSG ILAITFCGIT MKNYVESNIS QKSHTTVKYA 480
  481 LKMLSSSAET IIFMFLGVAT VNNMHVWNTW FVVLTIAFCS VFRVIGVILL SALANRFRLH 540
  541 KLSRVDQFVM SYGGLRGAVA FALVLLVDEN VVKQKNMFVT TTIAVIYFTV FLQGITIKPL 600
  601 VKILNVKRAN KRKPTMNERI HERFMDHLMA GIEDIVGKTG NYNVRDKFKR FDNRFIRPLL 660
  661 IRDLKGAEPK IIETYSKLTM RDAMEVMRRN PSTIGQMTGT ESMSALFRNY TNNYIGGRWA 720
  721 PPTIYTTCPS LTNLDNTCSR NLDMAELDYN PSKKDLTDAR IHHLLAEELK PYRRHRRLSY 780
  781 SRHAVDDRDL STQVNYKMQM NFRRMFNDRK HHKRSKRGAS NKEAKENVKQ NHVSFHDFQQ 840
  841 NGTTKQLTNA EECQQNPNEI NVVGPSDDWD DGLTFTAKSS LAEHPIPEED RNLSRESDGE 900
  901 RRVATPTATE SQLPWKRQGD ECTDAVQQNE FPAWASNKEY LAYNSPSATF LGGINKPKQP 960
  961 KSVIGLFRRE SSSSKAGSVG VGSTGAMDSA ASGSEKKKK