YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18677129, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.98
Transmembrane Helix	14	33	0.93
Non-Cytoplasmic	34	40	0.77
Transmembrane Helix	41	62	0.92
Cytoplasmic	63	84	0.87
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	142	0.97
Transmembrane Helix	143	162	0.95
Cytoplasmic	163	173	0.80
Transmembrane Helix	174	195	0.89
Non-Cytoplasmic	196	215	0.84
Transmembrane Helix	216	236	0.90
Cytoplasmic	237	242	0.78
Transmembrane Helix	243	264	0.86
Non-Cytoplasmic	265	275	0.83
Transmembrane Helix	276	298	0.90
Cytoplasmic	299	306	0.85
Transmembrane Helix	307	326	0.92
Non-Cytoplasmic	327	374	0.66
Transmembrane Helix	375	393	0.42
Cytoplasmic	394	403	0.59
Transmembrane Helix	404	422	0.49
Non-Cytoplasmic	423	429	0.70
Transmembrane Helix	430	448	0.89
Cytoplasmic	449	468	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAANSSSLS RQETWRLFAL VGACVGILLN TFQGDGAPLV ASLAFSGIAF AVTFSMIRWL  60
   61 VPVFLKAGLK GRDMAKPRRP EIPETMGAVC AIVYLLALIF FIPFAFYKDI VAATSGGGNR 120
  121 DVVIEVEHVE TGRMLHRFPH GKLASYLSGL LSLQCIVILG IGDDLLDIRW RHKVLIPAFG 180
  181 AIPMLIVYFV DFGVTQVVVP VPLQPYLGST IDLGWLYYAY MAAVAIFCPN SINMLAGING 240
  241 VEVAQSLVIA VLLIANDVLY LAPITPYPHP ATDSHLFSLY FLLPFVGVSV ALLCHNWYPS 300
  301 KVFVGDTYCY FAGMVFAVVG ILGHFSKTLL LLFIPQIFNF LYSTPQLFNL IPCPRHRLPK 360
  361 FNSVTGLLDA SVTEWTVPPS PLVATALNLL HTLRLMRVTK NEQGQIVEST NLTILNLWLV 420
  421 WAGPMKENQL AWSMVAVQTF CGLAGLFVRH RLALLVFRED NLALGGSV