YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CcapR-PA
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLRLFDSS LYYTLASASE SSGLASSTST ERSFNGTQGA GGVAAGGESL TPTDVAAVNL  60
   61 TYFTPAISHV MLAPTTIATT TASATMVQIQ TTAAPSHDLE TGGNSTSSDP GEFDNLNSFY 120
  121 FYETEQFAVL WILFTVIVLG NSAVLFVMFI NKNRKSRMNY FIKQLALADL CVGLLNVLTD 180
  181 IIWRITISWR AGNLACKAIR FSQVCVTYSS TYVLVAMSID RYDAITHPMN FSKSWKRARH 240
  241 LVAGAWLISA LFSLPILVLY EEKLIQGHPQ CWIELGSPIA WQVYMSLVSA TLFAIPALII 300
  301 SACYAIIVKT IWAKGSIFVP TERAGFGAAP ARRASSRGII PRAKVKTVKM TLTIVFVFII 360
  361 CWSPYIIFDL LQVFGQIPHS QTNIAIATFI QSLAPLNSAA NPLIYCLFSS QVFRTLSRFP 420
  421 PFKWFTCCCK SYRNNSQQNR CHTVGRRLHN SCDSMRTLTT SLTVSRRSTN KTNARVVICE 480
  481 RPTKVVTVPA MSERRGVSLK GNTDIL

Type	Start	End	Confidence
Cytoplasmic	1	65	0.57
Transmembrane Helix	66	82	0.48
Non-Cytoplasmic	83	126	0.90
Transmembrane Helix	127	150	0.93
Cytoplasmic	151	164	0.84
Transmembrane Helix	165	183	0.69
Non-Cytoplasmic	184	198	0.58
Transmembrane Helix	199	219	0.65
Cytoplasmic	220	239	0.90
Transmembrane Helix	240	259	0.96
Non-Cytoplasmic	260	284	0.90
Transmembrane Helix	285	308	0.89
Cytoplasmic	309	346	0.96
Transmembrane Helix	347	368	0.90
Non-Cytoplasmic	369	386	0.86
Transmembrane Helix	387	408	0.70
Cytoplasmic	409	506	0.78