YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4520356
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTKSMTDVT AEELSKDSVA MMLAKDRELK NKYLKQKHIS EQPWTWENWH RHINWLNFTL  60
   61 VLAVPLAGLI STKWVPLKLH TFVTAVILYC FGGLSITAGY HRHWAHRAYD CRLPVKIFFA 120
  121 LFGASAVEGS IKMWGHQHRV HHRYTDTPRD PYDAKRGFWY SHMGWMLLVP NPRYRARADI 180
  181 SDLLDDWVVR VQHRHYLLLM VVMAFFFPAI LTHFLFNDFW GGFIYAGLLR AVFIQQATFC 240
  241 VNSLAHWIGE QPFDDRRTPR DHILTALVTF GEGYHNFHHE FPSDYRNALK WYQYDPTKVV 300
  301 IYLLSKVGLA YNLKRFSQNA IDQGILQQQQ KKLDRMRAKL NWGPQLSELP VWDKSTFFEK 360
  361 AKEQKGLVII SGIVQDCSNF LTEHPGGQAL LKTSFGKDAT MAFNGGVYAH SNAAHNLLAT 420
  421 MRVAVIRDGG ANGDTFDAQL RYLASKENKK E

Type	Start	End	Confidence
Cytoplasmic	1	52	0.88
Transmembrane Helix	53	72	0.93
Non-Cytoplasmic	73	80	0.61
Transmembrane Helix	81	101	0.92
Cytoplasmic	102	114	0.73
Transmembrane Helix	115	135	0.66
Non-Cytoplasmic	136	157	0.59
Transmembrane Helix	158	174	0.44
Cytoplasmic	175	195	0.77
Transmembrane Helix	196	216	0.95
Non-Cytoplasmic	217	225	0.64
Transmembrane Helix	226	248	0.79
Cytoplasmic	249	451	0.75