YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12002052
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.62
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	59	0.64
Transmembrane Helix	60	83	0.87
Cytoplasmic	84	94	0.58
Transmembrane Helix	95	114	0.96
Non-Cytoplasmic	115	125	0.62
Transmembrane Helix	126	150	0.80
Cytoplasmic	151	165	0.57
Transmembrane Helix	166	188	0.86
Non-Cytoplasmic	189	194	0.48
Transmembrane Helix	195	213	0.73
Cytoplasmic	214	221	0.50
Transmembrane Helix	222	244	0.88
Non-Cytoplasmic	245	248	0.50
Transmembrane Helix	249	272	0.82
Cytoplasmic	273	378	0.77
Transmembrane Helix	379	399	0.87
Non-Cytoplasmic	400	408	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAFSELPMP LLINLIVSLL GFVATVTLIP AFRGHFIAAR LCGQDLNKTS RQQIPESQGV  60
   61 ISGAVFLIIL FCFIPFPFLN CFVKEQCKAF PHHEFVALIG ALLAICCMIF LGFADDVLNL 120
  121 RWRHKLLLHT AASLPLLMVY FTNFGNTTIV VPKPFRPILG LHLDLGILYY VYMGLLAVFC 180
  181 TNAINILAGI NGLEAGQSLV ISASIIVFNL VELEGDCRDD HVFSLYFMIP FFFTTLGLLY 240
  241 HNWYPSRVFV GDTFCYFAGM TFAVVGILGH FSKTMLLFFM PQVFNFLYSL PQLLHIIPCP 300
  301 RHRIPRLNIK TGKLEMSYSK FKTKSLSFLG TFILKVAESL QLVTVHQSET EDGEFTECNN 360
  361 MTLINLLLKV LGPIHERNLT LLLLLLQILG SAITFSIRYQ LVRLFYDV