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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7511998, gi|1...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.40
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKCAFNIV FVSIIFIIIV NGYAKDISGV KRGHERLNEY ISHYETLNYD HEHIRASHNR  60
   61 ARRSVTKDQY VHLKFASHGR DFHLRLKRDL NTFSNKLDFY DSKGPIDVST DHIYEGEVIG 120
  121 DRNSYVFGSI HNGVFEGKII TERDAYYVEH AKHYFPTNRT ATTTPPSTST TSSATTVTKS 180
  181 TQPTRPLAKS NTSTTAVNSK TENFIKKIAE STTTSQQLPE YTESSSSSST TTFPPTTEYF 240
  241 EDEKERNAED ELDFHSIIYK ESHVEDAYEN VREGHVAGCG ITDEVSQWME NIQNSAVEEL 300
  301 PEPMSKDYQK LHRKQLHKKS APQQQQQPHP PKKYISGDED FKYPHQKYTK EANFAEGAFY 360
  361 DPSTGRRLGS SANVADWHQL VHERVRRATD NGAGDRGSSG GSGRGREDNK NTCSLYIQTD 420
  421 PLIWRHIREG IADHDRGRKY EVDEKTREEI TSLIAHHVTA VNYIYRNTKF DGRTEHRNIR 480
  481 FEVQRIKIDD DSACRNSYNG PHNAFCNEHM DVSNFLNLHS LEDHSDFCLA YVFTYRDFTG 540
  541 GTLGLAWVAS ASGASGGICE KYKTYTETVG GQYQSTKRSL NTGIITFVNY NSRVPPKVSQ 600
  601 LTLAHEIGHN FGSPHDYPQE CRPGGLNGNY IMFASATSGD RPNNSKFSPC SIRNISNVLD 660
  661 VLVGNTKRDC FKASEGAFCG NKIVESGEEC DCGFNEEECK DKCCYPRLIS EYDQSLNSSA 720
  721 KGCTRRAKTQ CSPSQGPCCL SNSCTFVPTS YHQKCKEETE CSWSSTCNGT TAECPEPRHR 780
  781 DDKTMCNNGT ALCIRGECSG SPCLLWNMTK CFLTSTTLPH VSKRKLCDLA CQDGNDTSTC 840
  841 RSTSEFADKY NIQKGGISLQ PGSPCDNFQG YCDVFLKCRA VDADGPLLRL KNLLLNRKTL 900
  901 QTVAEWIVDN WYLVVLMGVA FIVVMGSFIK CCAVHTPSSN PKKRRARRIS ETLRAPMNTL 960
  961 RRMQRHPNQR GAGPRSIPPP AHEAQHYSRG GDGRGGGGGG GGRHGGSRSH HQQHPHDWDR1020
 1021 HQGGHSIVPL PTGGSHSSRN SAANQARRSD GRGPRSTSSG RPQAIASGSG AASGAARSHG1080
 1081 GYGAEQAIPG SIGGGVQAAI SSGGVVARAQ LPLPLPPPNG QQQMQQQQQL QLQQPAISPQ1140
 1141 QQPQQAFYTP KELPPRNKSR SSRTNNTSNT TTTTNSSTAA AGSGSVSGPG SGAGSSSKSK1200
 1201 SGKSAKAKDS KSQKSQQANN SRSSSKEKGV KPVRRNIVY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle