YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20856761, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	139	0.95
Transmembrane Helix	140	159	0.89
Non-Cytoplasmic	160	164	0.80
Transmembrane Helix	165	185	0.93
Cytoplasmic	186	208	0.83
Transmembrane Helix	209	232	0.77
Non-Cytoplasmic	233	252	0.84
Transmembrane Helix	253	273	0.86
Cytoplasmic	274	278	0.88
Transmembrane Helix	279	301	0.91
Non-Cytoplasmic	302	319	0.79
Transmembrane Helix	320	341	0.85
Cytoplasmic	342	352	0.88
Transmembrane Helix	353	376	0.93
Non-Cytoplasmic	377	396	0.92
Transmembrane Helix	397	419	0.90
Cytoplasmic	420	438	0.91
Transmembrane Helix	439	459	0.93
Non-Cytoplasmic	460	464	0.68
Transmembrane Helix	465	487	0.90
Cytoplasmic	488	495	0.88
Transmembrane Helix	496	519	0.93
Non-Cytoplasmic	520	526	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQNETFDQE REDLYHTFDE EDEESQTESS VPSTPLSRNR SEDVPVPWPR SYRQSMDLLT  60
   61 GVTPPTSTSF VSSFRQRRQS SVFGSFTSSP SKQQLLIDKD EIQSSVVSSI KSFLASHLQL 120
  121 SVPGDLLTPQ ENRSCTFSQS VLNGINVLCG VALLTMPYAV KEGGWLGLFI LFSFGIITFY 180
  181 TGILLKRCLE NSPGIHTYPD IGQAAFGTTG RILVSILLYV ELYASCVEYI IMMSDNLSRM 240
  241 FPNTSLYING FSLDSTQVFA ITTTLIVLPT VWLKDLSLLS YLSAGGVISS ILLALCLFWA 300
  301 GSVDGVGFHI SGQALDITNI PVAIGIYGFG FGSHSVFPNI YSSMKEPSKF PTVLLISFAF 360
  361 CTLFYIAVAV CGFTMFGDAI QSQFTLNMPP HFTSSKIAVW TAVVTPMTKY ALTITPVMLS 420
  421 LEELIPSSSR KMRSKGVSML FRTILVLSTL VVALTVPFFA TVAALIGSFI AMLIALIFPC 480
  481 LCYISIMKGR LTNFQIGICI LIVIIGIVSG CCGTYSAIAR LIGEMT