YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430342
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.70
Transmembrane Helix	90	112	0.58
Non-Cytoplasmic	113	117	0.65
Transmembrane Helix	118	135	0.88
Cytoplasmic	136	142	0.79
Transmembrane Helix	143	161	0.90
Non-Cytoplasmic	162	169	0.65
Transmembrane Helix	170	190	0.93
Cytoplasmic	191	200	0.81
Transmembrane Helix	201	220	0.95
Non-Cytoplasmic	221	227	0.79
Transmembrane Helix	228	247	0.95
Cytoplasmic	248	319	0.98
Transmembrane Helix	320	343	0.90
Non-Cytoplasmic	344	351	0.88
Transmembrane Helix	352	375	0.87
Cytoplasmic	376	383	0.82
Transmembrane Helix	384	403	0.97
Non-Cytoplasmic	404	414	0.81
Transmembrane Helix	415	438	0.81
Cytoplasmic	439	448	0.78
Transmembrane Helix	449	471	0.77
Non-Cytoplasmic	472	476	0.77
Transmembrane Helix	477	498	0.91
Cytoplasmic	499	521	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMTMSSHT SWGTLGPGNC APCSSYFSAR FQPPGSWPAS CSQRRICTPR RSTSVIRRLS  60
   61 GRMSTPPLDH CYVMVNYGES AYAMRQCRKF LYTTGFHSLT MEFDLVCLCD FFVAWSQYWH 120
  121 LFGLLIGGVA ATKLMRVLSP RQIYRTGIWC LLMCSLLMGL VKDFSLHCGL RCLAAVSCCF 180
  181 MITSGQYIFG DITAGKYRVG TLILYDCFWA LGLILLPGLA SNAPSWQHIY LGVTLSLLVI 240
  241 VFLLPWTPDS PRWQLQHTKE AQLAIERTVG ILLEAARTNG RMHKVSKELP QQLEELRERM 300
  301 LEPMPAVHWM HLWMGQRRST FHLVAVHMAL ATFMVVNTGL LLHVRSFGRE HLVSNTLAMG 360
  361 LAEMLGCFLA LHLTFNLSER KWQWAGGFAI VVGCIGSICW FLAEEDMPEV YGLTLGLLMA 420
  421 SLPQAAVACA QSMILACLGE LVPMEQRSCL SFSAVTWARV WQLSASFLTL LRQVSPALSL 480
  481 SAFCLLVILG GLGTCCLVTR DKEQPPVGAV VNKGQQLIAF T