YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21428980
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	378	0.92
Transmembrane Helix	379	401	0.89
Cytoplasmic	402	412	0.81
Transmembrane Helix	413	434	0.85
Non-Cytoplasmic	435	463	0.79
Transmembrane Helix	464	485	0.89
Cytoplasmic	486	494	0.75
Transmembrane Helix	495	515	0.84
Non-Cytoplasmic	516	578	0.90
Transmembrane Helix	579	600	0.92
Cytoplasmic	601	613	0.93
Transmembrane Helix	614	635	0.87
Non-Cytoplasmic	636	666	0.91
Transmembrane Helix	667	686	0.96
Cytoplasmic	687	706	0.93
Transmembrane Helix	707	727	0.88
Non-Cytoplasmic	728	732	0.63
Transmembrane Helix	733	752	0.68
Cytoplasmic	753	766	0.78
Transmembrane Helix	767	786	0.86
Non-Cytoplasmic	787	791	0.60
Transmembrane Helix	792	813	0.86
Cytoplasmic	814	836	0.86
Transmembrane Helix	837	856	0.89
Non-Cytoplasmic	857	861	0.72
Transmembrane Helix	862	880	0.59
Cytoplasmic	881	914	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLLLRHRH VNEHQGVLPF TKRKYNSYTS LQFLWMGADS AHQPYQQAQP PPRNLAKARR  60
   61 SICVTSSAPP TAAMLNVATA TAAAAAIDHR RHSTMSYLGN LSGTDDKKIK IMPAAEIGGS 120
  121 KRSNELKIDM KDDMYSSSQE DLKKLQNDTI LKRIPAGAEA TTVLVGAVEF LEQPTIAFVR 180
  181 LSEGVLMPTL TEVPVPVRFM FVLLGPRNFD LDYHEVGRSI STLMANEHFH SIAYKADDRK 240
  241 DLLSAINEFL DDSIVLPPGN WDRHDLLPFE ELKAKKDWIR TRKIKALQVK RDSEMIKIGK 300
  301 DEEKALLEKQ TLGAIGFTIG GGDGGGDGDS DDDNGRKKKK PSPLEKTGRL WGGLRNDLKR 360
  361 RMPMYKSDIL DGLNTETLAA TIFMYFACLS TAITFGGLVS AKTNSWIGIS ETLISCSLVG 420
  421 IVFHCLSCQP LVIIGTTGPL LLFDEALMVF CTQHEFDFLS LRVYVGVWLI IIALTVSAFE 480
  481 GSVYVRLLTR FTQEIFSALI TLIYIVETFM KLISIYRENP LLSDYNLPPP TLVAHEHATN 540
  541 ESLLNATASV TTNITQMVMN ISTTAMPIGP PPLPKNQPNT ALFCTILTLA TFVVAYYLKL 600
  601 FRNSHFLGRN ARRALGDFGV PISIAIFVLV DYLVPAVYTE KLVVPEGLSP SDPSKRGWYI 660
  661 GFDTSSTWIP FACVIPALLV YILIFMESQI SELIVDKPDR GLKKGSGLHW DIVLLCLLNC 720
  721 ACGIFGMPWH CAATVRSVTH VSSVTIMSRT HAPGESPRIV DVKEQRLSGF FVCLMIGLSV 780
  781 LMAPLLRLIP MAVLFGVFLY MGVASMSGVQ LFERIRLYFM PVKHYPPTSY VKRLRPWKLH 840
  841 LFTTIQVLCL VLLWSVKSSQ FSLAFPFFLI MMVPIRQNLT KLYKPEEMQA LDGSEMKKND 900
  901 DDEPDFYEQT NIPA