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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Mmp1-PC
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.55
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNCQSSVFI VVGTLFSIMA AAQSAPVSTT TQAEIYLSQF GYLPASARNP ASSGLHDQRT  60
   61 WVSAIEEFQS FAGLNITGEL DAETMKLMSL PRCGVRDRVG TGDSRSKRYA LQGSRWRVKN 120
  121 LTYKISKYPK RLKRVDVDAE IGRAFAVWSE DTDLTFTRKT SGPVHIEIKF VESEHGDGDA 180
  181 FDGQGGTLAH AFFPVFGGDA HFDDAELWTI GSPRGTNLFQ VAAHEFGHSL GLSHSDQSSA 240
  241 LMAPFYRGFE PVFKLDEDDK AAIQSLYGRK TNQLRPTNVY PATTQRPYSP PKVPLDDSIC 300
  301 KDSKVDTLFN SAQGETYAFK GDKYYKLTTD SVEEGYPQLI SKGWPGLPGN IDAAFTYKNG 360
  361 KTYFFKGTQY WRYQGRQMDG VYPKEISEGF TGIPDHLDAA MVWGGNGKIY FFKGSKFWRF 420
  421 DPAKRPPVKA SYPKPISNWE GVPNNLDAAL KYTNGYTYFF KGDKYYRFHD ARFAVDSATP 480
  481 PFPRPTAHWW FGCKNTPSST GNIVEGSDNE FEQHSMIPHA DDGNGDDFDA AVGDHQSNDE 540
  541 PIVPEVAERT GNGAMSQSKL TSSSAVSTVI TTILMCLVSK LIVS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle