YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.99
Transmembrane Helix	40	65	0.79
Non-Cytoplasmic	66	80	0.67
Transmembrane Helix	81	102	0.76
Cytoplasmic	103	121	0.79
Transmembrane Helix	122	144	0.88
Non-Cytoplasmic	145	157	0.81
Transmembrane Helix	158	180	0.88
Cytoplasmic	181	187	0.93
Transmembrane Helix	188	209	0.93
Non-Cytoplasmic	210	217	0.76
Transmembrane Helix	218	242	0.79
Cytoplasmic	243	257	0.87
Transmembrane Helix	258	280	0.82
Non-Cytoplasmic	281	296	0.77
Transmembrane Helix	297	319	0.83
Cytoplasmic	320	336	0.77
Transmembrane Helix	337	360	0.91
Non-Cytoplasmic	361	383	0.79
Transmembrane Helix	384	407	0.69
Cytoplasmic	408	415	0.50
Transmembrane Helix	416	436	0.90
Non-Cytoplasmic	437	440	0.65
Transmembrane Helix	441	461	0.91
Cytoplasmic	462	494	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGGGELTA ALLKKTAENG GEEKDELGLK QKVWIESKKL WIVAAPAIFT RFSTFGVSII  60
   61 SQSFIGHLGP IELAAYSITF TVLLRFSNGI LLGMASALET LCGQAYGAKQ NHMLGIYLQR 120
  121 SWIVLTGCTI CLTPVYIFSG PILLALGQEE RIVRVARIIA LWVIGINFSF VPSFTCQMFL 180
  181 QAQSKNKIIA YVAAVSLGVH VFLSWLLMVH FNFGITGAMT STLVAFWLPN IAQLLFVTCG 240
  241 GCKDTWRGFS MMAFKDLWPV FKLSMSSGGM LCLELWYNSI LVLLTGNLKN AEVALDALAI 300
  301 CLNINGLEMM IALGFLAAAS VRVSNELGSG NPKGAKFATL TAVFTSLSLG IVLFFVFLFL 360
  361 RGRVSYIFTT SEAVAAEVAD LSPLLAFSIL MNSVQPVLSG VAVGAGWQGY VTYVNLACYY 420
  421 LVGIPIGIIL GYVVGLQVKG VWIGMLFGIF VQTCVLTVMT LRTDWDQQVS TSLRRLNRWV 480
  481 VPESRDVNQV SSEE