YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRAM1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.98
Transmembrane Helix	71	89	0.93
Non-Cytoplasmic	90	107	0.83
Transmembrane Helix	108	131	0.83
Cytoplasmic	132	150	0.95
Transmembrane Helix	151	175	0.85
Non-Cytoplasmic	176	182	0.83
Transmembrane Helix	183	203	0.93
Cytoplasmic	204	212	0.86
Transmembrane Helix	213	233	0.93
Non-Cytoplasmic	234	253	0.92
Transmembrane Helix	254	275	0.87
Cytoplasmic	276	300	0.92
Transmembrane Helix	301	323	0.89
Non-Cytoplasmic	324	348	0.93
Transmembrane Helix	349	368	0.94
Cytoplasmic	369	387	0.88
Transmembrane Helix	388	410	0.91
Non-Cytoplasmic	411	416	0.89
Transmembrane Helix	417	437	0.88
Cytoplasmic	438	454	0.88
Transmembrane Helix	455	475	0.93
Non-Cytoplasmic	476	481	0.81
Transmembrane Helix	482	505	0.90
Cytoplasmic	506	533	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPRIESEES APLVNKNNNN NNDNNNNNNV DEENPLIIES GIPIEDLEQK NKPYLIKVPN  60
   61 IDKPDSKWIN FKTLWAFTGP GFLMSIAYLD PGNLESDIQA GAMAGYQLLW VLFWSTVIGF 120
  121 WLQMLASRLG VVTGKHLAEH CREQYPKTPR LLLWLMTELA IIGSDIQEVI GTAIALQILS 180
  181 NGHIPLWAGV LFTAADTFTF LFLEKYGIRK LEAFFCSLIA IMAISFGVEY IISKPDQIEV 240
  241 VKGVFIPLCS QNNISQAVGI LGAVVMPHNI YLHSALVQSR EIDRKSETQV KIANKYNRLE 300
  301 SAFALIISFI INLLLVSVFA KGFYGETTEI GLSSAADFLM DKYGKVAKYI WAIGLFSAGQ 360
  361 CSTMTGTYSG QFVMEGFLKL KIAPWKRLLI TRCTAIVPAM VVAILSTSHL DSLDQWLNIL 420
  421 QSIQLPFAVV PVLLFTSSEK IMGSKFKNHW LNNQFVRFLS LLIIAINIYL IITFSMQISE 480
  481 SAWMISIVSI SFFFYFIFIV YLSMGQENFN SMTKKIKNLF NNNSNQTYNN INY