YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473563, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSSVNLAD LPKYPNLYGY EPSQGLSIAA IVCFSTVSLV LIILSIKFKK FYFLVAPGAG  60
   61 IVTVIGYAIR IKSAQDTHVL GTYIATTLLI LLPPTALAAV FLFAQLGKIM KRTGIQHPIF 120
  121 KPNVVKYLFL IVDIFSIIIQ GAGGALLAQS ADNPDLDKPA KGVMLTGLCI ALCSFTLFFF 180
  181 LIIYLYIKVL KVQEEDKKWR IIFIALFASG ILIILRSIYR VAEYAGGYHS AVMINEPLFY 240
  241 GLDTLPMFLL MCIWIPFHPG FVSLSKKKEN KEEDKKNYDT ETRNGVELE

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.94
Transmembrane Helix	25	44	0.95
Cytoplasmic	45	50	0.86
Transmembrane Helix	51	71	0.94
Non-Cytoplasmic	72	82	0.83
Transmembrane Helix	83	104	0.94
Cytoplasmic	105	123	0.92
Transmembrane Helix	124	147	0.89
Non-Cytoplasmic	148	162	0.92
Transmembrane Helix	163	187	0.91
Cytoplasmic	188	198	0.94
Transmembrane Helix	199	219	0.94
Non-Cytoplasmic	220	238	0.92
Transmembrane Helix	239	261	0.87
Cytoplasmic	262	289	0.97