YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-12
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFKKIQWF CNLIRLRSYY KFLLLIAYTA FGAWLFRTYE LQADIKRRSV FGNTTNLVRR  60
   61 QLAERWIEMH KDAVLRNDSA LRFRRAAEAV EWLLDELNLS DHIRDLSEET PWTWTGAMFY 120
  121 AGQLYTTIGY GYPTTKTDEG RICTIFYALF GIPCFLMYLK IENAIEWKKD KQLGKRALKM 180
  181 HGLINDSFQS IGKTLSKKMK KYYKKLRRSR VGRILLPTRV TAMKDGFEDP EAAEERKKKP 240
  241 FPIPIAIIML IIWICFSASM FCIWEDTWVF SSAVYFFIVS ISTVGLGDML FRTPDMMVFN 300
  301 FLLILVGLAL LSMCFELITD RVAKWKQKRF DEHIKKVQKM AFQVFEKDPF IEEAPPLGIR 360
  361 MAPNLMQIAA THVSEEKRGF FAEFKDWFAG KVTDNVIQSK LEDSDDESDS EEALEEFDSP 420
  421 QIATVTANDL IVCSNGAATR RVSKQSYALS DISNLSNSKI LPGNNYGQLL DRIKAMEKFK 480
  481 PKKNDLDSRM FAKFLENKKL AKILEQTELR ELATVSCQTD LSGLVVQRRN PKGRHARIGS 540
  541 CSSQSTMSTL LPNKMHAPDE DSVMSFTFGD LKFDYKTEPF IDEYYIRESN HSIFDFDEDE 600
  601 TVRIPQKMLI SRPGMPPPPP SRPLNLASPL RTLLEKEQKY DEDPEIQLTP RRLNSLSDIQ 660
  661 ARKVKLGVDE NLQHARLVCG LLPQDFDSPS TSTSTSMIDS GYELSKRDAS TMA

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.49
Transmembrane Helix	18	38	0.84
Cytoplasmic	39	111	0.55
Transmembrane Helix	112	129	0.47
Non-Cytoplasmic	130	141	0.66
Transmembrane Helix	142	159	0.78
Cytoplasmic	160	240	0.93
Transmembrane Helix	241	263	0.90
Non-Cytoplasmic	264	270	0.70
Transmembrane Helix	271	291	0.88
Cytoplasmic	292	297	0.81
Transmembrane Helix	298	319	0.93
Non-Cytoplasmic	320	713	0.91