YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-9
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISPVLRLTA LHCVLFHLLT EVHSSADEYR LLADLRHNYD PYERPVANAS EPLVVSVKIY  60
   61 LQQILDVDEK NQVITLVAWI EYQWTDYKLK WDPSEYGGIK DIRIPGNANA IWKPDVLLYN 120
  121 SADENFDSTY PVNYVVSYTG DVLQVPPGIL KLSCKIDITY FPFDDQICHL KFGSWTYSGN 180
  181 FIDLRINGPE GKNISDEGID VQYYVQNGEW NLLAVPARHE TNIFDEQPYP SLFFYLIIQR 240
  241 RTLYYGLNLI IPSFLISLMT VLGFTLPPDA GEKITLEITI LLSVCFFLSM VADMTPPTSE 300
  301 AVPLIGAFFS CCMLVVSASV VFTVLVLNLH NRKPETHEMS PFLRELLLIW LPWLLLMRRP 360
  361 GKTIFNCTHL KAEKAEEKAK QGSIKNGVGP GKPTDSVHPS EGLSLMKNIK LGRQQTIDFE 420
  421 YEFHVQHNHL MPVAPSEMTP RVTYSKVMAE SYVEDVVMTE LNKYMQKACL ELKNISSQTR 480
  481 AMRKKMEEDE RDEQAANDWK FAAMVVDRCC LITFSVFIVV STCGIMFSSP HLIA

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	242	0.99
Transmembrane Helix	243	266	0.92
Cytoplasmic	267	273	0.93
Transmembrane Helix	274	295	0.89
Non-Cytoplasmic	296	303	0.83
Transmembrane Helix	304	327	0.94
Cytoplasmic	328	508	0.97
Transmembrane Helix	509	529	0.92
Non-Cytoplasmic	530	534	0.70