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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VSR1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGLFTLSF LLILNLAMGR FVVEKNNLKV TSPDSIKGIY ECAIGNFGVP QYGGTLVGTV  60
   61 VYPKSNQKAC KSYSDFDISF KSKPGRLPTF VLIDRGDCYF TLKAWIAQQA GAAAILVADS 120
  121 KAEPLITMDT PEEDKSDADY LQNITIPSAL ITKTLGDSIK SALSGGDMVN MKLDWTESVP 180
  181 HPDERVEYEL WTNSNDECGK KCDTQIEFLK NFKGAAQILE KGGHTQFTPH YITWYCPEAF 240
  241 TLSKQCKSQC INHGRYCAPD PEQDFTKGYD GKDVVVQNLR QACVYRVMND TGKPWVWWDY 300
  301 VTDFAIRCPM KEKKYTKECA DGIIKSLGID LKKVDKCIGD PEADVENPVL KAEQESQIGK 360
  361 GSRGDVTILP TLVVNNRQYR GKLEKGAVLK AMCSGFQEST EPAICLTEDL ETNECLENNG 420
  421 GCWQDKAANI TACRDTFRGR LCECPTVQGV KFVGDGYTHC KASGALHCGI NNGGCWRESR 480
  481 GGFTYSACVD DHSKDCKCPL GFKGDGVKNC EDVDECKEKT VCQCPECKCK NTWGSYECSC 540
  541 SNGLLYMREH DTCIGSGKVG TTKLSWSFLW ILIIGVGVAG LSGYAVYKYR IRSYMDAEIR 600
  601 GIMAQYMPLE SQPPNTSGHH MDI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle