YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRK2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKCLMFVS IVSVFFMVVN GVSETETLLK FKNSLVIGRA NALESWNRRN PPCKWTGVLC  60
   61 DRGFVWGLRL ENLELSGSID IEALMGLNSL RSLSFINNKF KGPFPEFKKL VALKSLYLSN 120
  121 NQFDLEIPKD AFDGMGWLKK LHLEQNNFIG EIPTSLVKSP KLIELRLDGN RFTGQIPEFR 180
  181 HHPNMLNLSN NALAGQIPNS FSTMDPKLFE GNKGLCGKPL DTKCSSPYNH SSEPKSSTKK 240
  241 TSSKFLYIVA AAVAALAASL IIIGVVIFLI RRRKKKQPLL SAEPGPSSLQ MRAGIQESER 300
  301 GQGSYHSQNR AAKKMIHTTK LSFLRDDKGK FELQDLLKAS AEILGSGCFG ASYKTLLSNG 360
  361 SVMVVKRFKH MNSAGIDEFQ EHMKRLGRLN HENLLPIVAY YYKKEEKLFV SDFVANGSLA 420
  421 AHLHGHKSLG QPSLDWPTRF NIVKGVGRGL LYLHKNLPSL MAPHGHLKSS NVLLSEKFEP 480
  481 LLMDYGLIPM INEESAQELM VAYKSPEYVK QSRVTKKTDV WGLGVLILEI LTGKLLESFS 540
  541 QVDKESEEDL ASWVRSSFKG EWTQELFDQE MGKTSNCEAH ILNLMRIGLS CCEVDVEKRL 600
  601 DIREAVEKME DLMKEREQGD DDFYSTYASE ADGRSSRGLS SEGINLS

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	245	0.95
Transmembrane Helix	246	270	0.93
Cytoplasmic	271	647	0.86