YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ppk23-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQEKRHPPE SRTQRFLETL VIFRRSLIYQ TKEFFQNSTL HGVRYIAESG RPIGEKFMWF  60
   61 CFTSIGAVTA LVIIMSLWEK FQTNPTITGL DTDFHNQNVV FPTTVVCPEA AFDHDKTYEK 120
  121 VYNTLANYDE AQAQMYTPFL RILTSLNFEN VRDAKVLSQS IPQNLLDAHT IREWAFEGHI 180
  181 DCKNVFVSCK YRDEDIPCCD HFEPIYTEHG FCYAFNSRFK STPTEDVKTG APHDLYETDK 240
  241 KWALFFIPNS TSRIFIFSNE EYFGSDFNAQ IDWSEPQLVE VRISKKNTYT TDDARQLSIG 300
  301 QRKCIFSDEV KLNYFPDAYT FSSCMKQCRM NKAIKLCKCN PPFYKPIREL SCVINIFTNL 360
  361 IAYILLLYLT PKANVPMCSI KDFDCLDEFK SNITNIKDCL QCELSCSKTV FNIDKLIKMS 420
  421 DRPESLGVLV EFLTWPIIRY KREVLFGWVD LLVSFGGIAS LFLGFSLLSG VEIIYYFTLR 480
  481 ACCMVYKNRV NYANRIFQST SI

Type	Start	End	Confidence
Cytoplasmic	1	56	0.94
Transmembrane Helix	57	78	0.92
Non-Cytoplasmic	79	351	0.95
Transmembrane Helix	352	370	0.58
Cytoplasmic	371	443	0.61
Transmembrane Helix	444	468	0.79
Non-Cytoplasmic	469	502	0.54