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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28569548
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLLLGVLV VLMALPPPTA GTTDWMQSCG TCHCQWNSGK KSADCKNKAL TKIPQDMSNE  60
   61 MQVLDFAHNQ IPELRREEFL LAGLPNVHKI FLRNCTIQEV HREAFKGLHI LIELDLSGNR 120
  121 IRELHPGTFA GLEKLRNVII NNNEIEVLPN HLFVNLSFLS RIEFRNNRLR QVQLHVFAGT 180
  181 MALSAISLEQ NRLSHLHKET FKDLQKLMHL SLQGNAWNCS CELQDFRDFA ISKRLYTPPT 240
  241 DCQEPPQLRG KLWSEVPSEN FACRPRILGS VRSFIEANHD NISLPCRIVG SPRPNVTWVY 300
  301 NKRPLQQYDP RVRVLTSVEQ MPEQPSQVLT SELRIVGVRA SDKGAYTCVA DNRGGRAEAE 360
  361 FQLLVSGDYA GAVSASDGMG MGAIGAPTID PQTNMFLIIC LIITTLLLLL LVAVLTLFWY 420
  421 CRRIKTYQKD TTMMSGDGLI SSKMDKTHNG SMLEGSVIME MQKSLLNEVN PVEKPPRRTD 480
  481 IESVDGGDDV LEIKKTLLDD TVYVANHSRD EEAVSVAMSD TTTTPRSRHT YVDDAYANSL 540
  541 PPDLLAFPAR VPPTSPSMQS SQSNIPDQVI YGIRSPPSLT SPVYTHMTPH GIYGTKTMTA 600
  601 PHNGFMTLQH PKSRNLALIA TTNSSRQHQH HHQLQQQQQH HHHHQQQQQQ QQQQQHPLAT 660
  661 TSPFLPAPVV YSPATGVVMK QGYMTIPRKP RAPSWAPSTS GAAGHGSIQL SEFQSPTSPN 720
  721 PSETGTATTA ELQAEPVYDN LGLRTTAGGN STLNLTKIAG SQGGAGQQYS MRDRPLPATP 780
  781 SLTSVSSATN ASKIYEPIHE LIQQQQQLQQ QQQQQQQRLG SMDTEPLYGV RQQGITILPG 840
  841 SSISGAGLGH AAYLSPGSGA AVSPSHASSS GDSPKAAKIP PRPPPKPKKK MSVTTTRSGQ 900
  901 GSTSQLFDDE GEDGTEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle