YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30692913, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIFAAQ  60
   61 ESNLSVSNEN ETSEWLMQDF YTLRKDVEIA SARVEEIRAS ANLQQLEQEI TNLESKATDT 120
  121 SFWDDRTKAQ ETLSSLNDLK DRMRLLSEFK TMVEDAETIV KLTEEMDSTD VSLLEEAMGI 180
  181 IKELNKSLDK FELTQLLSGP YDKEGAVVYI TAGAGGTDAQ DWADMLLRMY MRWGEKQRYK 240
  241 TKVVEMSNGE EAGIKSATLE IEGRYAYGYI SGEKGTHRIV RQSPFNSKGL RQTSFSGVEV 300
  301 MPLLPEEAVG IEIPEEDLDI SFTRAGGKGG QNVNKVETAV RITHIPTGVA VRCTEERSQL 360
  361 ANKTRALIRL KAKLMVIAEE QRATEIKEIR GDAVKAEWGQ QIRNYVFHPY KLVKDVRTGH 420
  421 ETSDITSVMD GDLDPFIKAY LKHKYTLAMA SAVTN

Type	Start	End	Confidence
Signal Peptide	1	17	0.73
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	455	0.99