YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12331298
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFLSLASIF LFLSFLFLLR KWKNSNSQSK KLPPGPWKLP LLGSMLHMAG GLPHHVLRDL  60
   61 AKKYGPLMHL QLGEVSAVVV TSPDMAKEVL KTHDIAFASR PKLLAPEIVC YNRSDIAFCP 120
  121 YGDYWRQMRK ICVLELLSAK NVRSYGSIRR DEVDRLVNFI RSSSGEPVNF TERLFLFTSS 180
  181 MTCRSAFGKV FKEQDKFIQL IKEVIGLAGG FDVADIFPSL KFLHVLSGMK GKIMNAHHKV 240
  241 DAIVEDVINE HKKKFAIGKT NGALGGEDLI DVLIRLMNDG GLQFPITNDN IKAIIFDMFA 300
  301 AGTETSSSTL VWAMVQMMKN PSVIAKAQAE VREAFKDKET FDENDVEELK YLKLVIKETL 360
  361 RLHPPVPLLV PRECREETDI NGYTIPVKTK VMVNVWALGR DPKYWDDAES FKPERFEQRS 420
  421 VDFVGNNFEY LPFGGGRRIC PGISFGLANV YLPLAHLLYH FDWKLPIGME PKDLNLTELV 480
  481 GVTAARKDDL ILVATPYEPP RQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.90
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	502	0.98