YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12697484
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.92
Transmembrane Helix	18	38	0.86
Non-Cytoplasmic	39	69	0.89
Transmembrane Helix	70	90	0.94
Cytoplasmic	91	98	0.91
Transmembrane Helix	99	119	0.94
Non-Cytoplasmic	120	128	0.67
Transmembrane Helix	129	147	0.89
Cytoplasmic	148	162	0.77
Transmembrane Helix	163	185	0.92
Non-Cytoplasmic	186	212	0.93
Transmembrane Helix	213	232	0.96
Cytoplasmic	233	343	0.83
Transmembrane Helix	344	365	0.75
Non-Cytoplasmic	366	372	0.58
Transmembrane Helix	373	394	0.91
Cytoplasmic	395	403	0.65
Transmembrane Helix	404	428	0.80
Non-Cytoplasmic	429	442	0.64
Transmembrane Helix	443	464	0.87
Cytoplasmic	465	479	0.66
Transmembrane Helix	480	503	0.83
Non-Cytoplasmic	504	536	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGELGVLNA LDVAKTQWYH FTAIVIAGMG FFTDAYDLFC ISLVTKLLGR IYYSDPKAPK  60
   61 PGTLPPNVQA AVTGVALCGT LAGQLFFGWL GDKLGRKKVY GITLILMVVC SLASGLSFGS 120
  121 SAKGVMATLC FFRFWLGFGI GGDYPLSATI MSEYANKKTR GAFIAAVFAM QGFGIMAGGI 180
  181 VALIVSAGFD HKYKVPSYQE NPQASLVLPQ FDYVWRIVLM FGALPAALTY YWRMKMPETA 240
  241 RYTALVAKNA QQAATDMSKV LKVELEVEEE KVQKITEADT NKYGLFSKEF AKRHGLHLVG 300
  301 TTTTWFLLDI AFYSQNLFQK DIFSAIGWIP PAKEMNAIHE VYKIARAQTL IALCSTVPGY 360
  361 WFTVAFIDYM GRFAIQLMGF FFMTVFMFAL AIPYDHWTKK ENRIGFVVMY SLTFFFANFG 420
  421 PNATTFVVPA EIFPARLRST CHGISAAAGK AGAIVGAFGF LYAAQSKDPT KTDKGYPTGI 480
  481 GIKNSLIMLG VINFAGMLFT LLVPESKGKS LEELSGENED GAEGIELPAS ARTVPV