YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5420276
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITRARAKT LGSSGGLPPL HPSVRQDKKQ GLVTQGTKSK RPAPDENKPA NSSSTASQQP  60
   61 KRRAVLRDVT NVLCENPYMN CINGSKFQVK KFSDKRNSKV TPALLVKKPE LEDRKESVIE 120
  121 EAKMVKVEES QEHCSQAHFK DHPFTQPSEY ITAAQSGLVD LMPVNRSSCN DITLQTTTPK 180
  181 DESKVCLKQE GSNSLSIADI DSKHKDPLMC SLYAPDIYNN LQAMELDRRP SFNYMEKLQR 240
  241 DINKGMRSIL IDWLVEVSEE YRLVPDTLYL TVHLIDRFLS EHYIEKQKLQ LLGVTCMLIA 300
  301 SKYEEICAPR VEEFCFITDN TYSKEEVVRM ESLVLNFLGF QLAAPTTKKF LRRFVQASQA 360
  361 SYEVPSVELE FMANYLAELT LAEYSFLKFL PSVTAASAVF LARWTLDQSN HPWNSTLEHY 420
  421 TTYKASDLKT TVLLLQDLQM NTSGSTLNAI REKYKQPKFK SVATLSSPKP VQSLF

Type	Start	End	Confidence
Signal Peptide	1	22	0.79
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	475	0.98