YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20466169, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	78	0.99
Transmembrane Helix	79	100	0.91
Cytoplasmic	101	109	0.73
Transmembrane Helix	110	132	0.85
Non-Cytoplasmic	133	150	0.83
Transmembrane Helix	151	174	0.86
Cytoplasmic	175	207	0.91
Transmembrane Helix	208	228	0.86
Non-Cytoplasmic	229	236	0.85
Transmembrane Helix	237	259	0.91
Cytoplasmic	260	426	0.99
Transmembrane Helix	427	447	0.89
Non-Cytoplasmic	448	465	0.68
Transmembrane Helix	466	488	0.80
Cytoplasmic	489	498	0.91
Transmembrane Helix	499	523	0.86
Non-Cytoplasmic	524	531	0.70
Transmembrane Helix	532	552	0.89
Cytoplasmic	553	560	0.68
Transmembrane Helix	561	580	0.92
Non-Cytoplasmic	581	585	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFRSLISLL FLLFFTSSAY ARFVSLNPSS TSLISDGIDG GSNLAGSGSV IKSVVSAPAE  60
   61 EKEEACEQTY GFMPCTKTAL GNVFLILVYG FLMFTAATYL SAGSELLLEI LGPGIVGGLF 120
  121 LPMLGALPDA MLIMVSGLSG DAATAQSQVS VGMGLLAGST VMLLTVIWGT CTVVGKCDLR 180
  181 DSIAVNNQDT KGFHLKDSGV TVDIWTSYAA RIMAISVIPF VIVQLPQMLG STSGRQLSVL 240
  241 IALILSVLML ISYCVYQVFQ PWIQRRRLAF AKHKHVISGI LRHLKQHALG RLLDDEGQPD 300
  301 EHVIRKLFLT IDANNDGHLS AAELKALIIG ISFEDIDFDK DDAVGKVLQD FDKTLDEQVD 360
  361 QEEFVRGIKQ WLIQAMGGAP SGPEAGPRTM KFLDNFHVQT KREHALLGDN ENGENDEEGG 420
  421 EVADPKWITI KAALLLLLGA AIAAAFADPL VDTVNNFSAA TGIPSFFISF IALPLATNSS 480
  481 EAVSAIIFAS RKKIRTASLT FSELCGGVTM NNILCLSVFL AIVYVRGLTW NFSSEVLVIL 540
  541 IVCLVMGGFA SFRTTYPLWT CFIAYLLYPF SLGLVYILDY WFGWS