YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAX2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.95
Transmembrane Helix	72	94	0.71
Non-Cytoplasmic	95	98	0.68
Transmembrane Helix	99	117	0.59
Cytoplasmic	118	128	0.44
Transmembrane Helix	129	151	0.69
Non-Cytoplasmic	152	162	0.62
Transmembrane Helix	163	187	0.88
Cytoplasmic	188	196	0.66
Transmembrane Helix	197	219	0.89
Non-Cytoplasmic	220	231	0.63
Transmembrane Helix	232	252	0.92
Cytoplasmic	253	287	0.71
Transmembrane Helix	288	309	0.86
Non-Cytoplasmic	310	316	0.60
Transmembrane Helix	317	341	0.79
Cytoplasmic	342	353	0.66
Transmembrane Helix	354	378	0.88
Non-Cytoplasmic	379	386	0.66
Transmembrane Helix	387	406	0.95
Cytoplasmic	407	412	0.69
Transmembrane Helix	413	433	0.91
Non-Cytoplasmic	434	441	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCCKVPVLI EAQVEMVSAN ELENKSLFRQ EEDATQTKEA SLMEQGSLST SFPQHTPKAP  60
   61 KNSVLNSIKI VIFCNKLNLL LPFGPLAILV HYMIDSKGWV FLLTLVGITP LAERLGYATE 120
  121 QLACYTGPTV GGLLNATFGN VTELIISIFA LKNGMIRVVQ LTLLGSILSN MLLVLGCAFF 180
  181 CGGLVFYQKD QVFDKGIATV NSGLLLMAVM GILFPAVLHY THSEVHAGSS ELALSRFSSC 240
  241 IMLIAYAAYL FFQLKSQSNS YSPLDEESNQ NEETSAEDED PEISKWEAII WLSILTAWVS 300
  301 LLSGYLVDAI EGASVSWNIP IAFISTILLP IVGNAAEHAG AIMFAMKDKL DLSLGVAIGS 360
  361 SIQISMFAVP FCVVIGWMMG QQMDLNFQLF ETAMLFITVI VVAFFLQEGS SNYFKGLMLI 420
  421 LCYLIVAASF FVHEDPHQDG I