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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TI110_ARATH
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSLVTAIN APISPSPRSP LLSHFLPTLP HRFSKSECLS RRRYRVSFPR SSAASSDQLS  60
   61 VSTQAKNPGI HGNKKELTGL QPIVEKMTPP VRLATSAVVL AASLATGYGL GLRLAGSRNI 120
  121 AFGGAAVAGA AGGAVVYALN SAVPEVAAIS LHNYVAEFED PASVTKDDVE KIADRYGVNK 180
  181 GDEAFQAEIC DIYCRYVTSV LPTEGQSLKG DEVAKIVKFK NALGIDEPDA AAMHMEIGRR 240
  241 IFRQRLETGE REGDAEQRRA FMRLVYVSAL VFGDASSFLL PWKRVLKVTD AQVEIAIREN 300
  301 AKQLYAERLK LVGRDINVEN LVDLRKSQLS FKLSDELAED LFREHTRKVV VENISSALSI 360
  361 LKSRTRAAKS LASVVEELEK VLEFNNLLVS LKSHSEADQF ARGVGPISLI GDESDFERRM 420
  421 DDLKLLYRAY VTDALSGGRL EENKLVAMSQ LRNILGLGKR EAEAISVDVT SKSYRKRLAN 480
  481 AVSSGDLEAQ DSKAKYLQKL CEELHFDAQK AGAIHEEIYR QKLQQCVTDG ELSDDNVAAL 540
  541 LRLRVMLCIP QQTVDTAHAE ICGTIFEKVV RDAISSGVDG YDAETRKSVR KAAHGLRLSR 600
  601 ETAMSIASKA VRRVFTNYIR RARAAENRTD SAKELKKMIA FNTLVVTEMV ADIKGESSDK 660
  661 APEEDPVQEK EEDDEDEEWG SLESLRKTRP DKELAEKMGK PGQTEITLKD DLPDRDRIDL 720
  721 YKTYLLYCVT GEVTRIPFGA QITTKRDDSE YLLLNQLGGI LGLSSKEIVN IHVGLAEQAF 780
  781 RQQAEVILAD GQLTKARVEQ LDELQKQVGL PQPQAEKVIK NITTTKMANA IETAVNQGRL 840
  841 NIKQIRELKE ANVSLDSMIA VSLREKLFKK TVSDIFSSGT GEFDETEVYQ TIPSDLSIDV 900
  901 EKAKRVVHDL AQSRLSNSLV QAVALLRQRN SKGVVLSLND LLACDKAVPA EPMSWEVSEE 960
  961 LSDLYAIYSK SDPKPAPEKV LRLQYLLGID DSTATALREM EDGALSSAAE EGNFVF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle