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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB1D_ARATH
Protein type: Transmembrane
Type Confidence: 0.76
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLQLLQLT ERGRGLVASR RKSILLAAGI VAAGGTAVYL KSRVASRRPD SSRLCNGQSD  60
   61 DDETLEKLTA TDQNAKITTK KKKGGGLKSL QVLTAILLSQ MGKMGARDLL ALVATVVFRT 120
  121 ALSNRLAKVQ GFLFRAAFLR RAPLFLRLIS ENIMLCFMLS TLHSTSKYIT GALSLRFRKI 180
  181 LTKIIHSHYF ENMVYYKISH VDGRITHPEQ RIASDVPRFS SELSDLILDD LTAVTDGILY 240
  241 AWRLCSYASP KYIFWILAYV LGAGTAIRNF SPSFGKLMSK EQQLEGEYRQ LHSRLRTHSE 300
  301 SIAFYGGETR EESHIQQKFK NLVSHMSHVL HDHWWFGMIQ DFLLKYLGAT VAVILIIEPF 360
  361 FSGHLRPDDS TLGRAEMLSN IRYHTSVIIS LFQALGTLSI SSRRLNRLSG YADRIHELMA 420
  421 VSRELSGDDK SSFQRNRSRN YLSEANYVEF SDVKVVTPTG NVLVEDLTLR VEQGSNLLIT 480
  481 GPNGSGKSSL FRVLGGLWPL VSGHIVKPGV GSDLNKEIFY VPQRPYMAVG TLRDQLIYPL 540
  541 TSGQESELLT EIGMVELLKN VDLEYLLDRY QPEKEVNWGD ELSLGEQQRL GMARLFYHKP 600
  601 KFAILDECTS AVTTDMEERF AAKVRAMGTS CITISHRPAL VAFHDVVLSL DGEGGWSVHY 660
  661 KRDDSALLTD AEIDSVKSSD TDRQNDAMVV QRAFAAARKE SATNSKAQSY QTQLIARSPV 720
  721 VDKSVVLPRF PQPQTSQRAL PSRVAAMLNV LIPTIFDKQG AQLLAVACLV VSRTLISDRI 780
  781 ASLNGTTVKY VLEQDKAAFV RLIGLSVLQS GASSIIAPSL RHLTQRLALG WRIRLTQHLL 840
  841 RNYLRNNAFY KVFHMSGNSI DADQRLTRDL EKLTADLSGL LTGMVKPSVD ILWFTWRMKL 900
  901 LTGQRGVAIL YTYMLLGLGF LRRVAPDFGD LAGEEQQLEG KFRFMHERLN THAESIAFFG 960
  961 GGAREKAMVD KKFRALLDHS LMLLRKKWLY GILDDFVTKQ LPNNVTWGLS LLYALEHKGD1020
 1021 RALVSTQGEL AHALRYLASV VSQSFMAFGD ILELHKKFLE LSGGINRIFE LDEFLDASQS1080
 1081 GVTSENQTSR LDSQDLLSFS EVDIITPAQK LMASKLSCEI VSGKSLLVTG PNGSGKTSVF1140
 1141 RVLRDIWPTV CGRLTKPSLD IKELGSGNGM FFVPQRPYTC LGTLRDQIIY PLSKEEAEKR1200
 1201 AAKLYTSGES STEAGSILDS HLKTILENVR LVYLLERDVG GWDATTNWED ILSLGEQQRL1260
 1261 GMARLFFHRP KFGVLDECTN ATSVDVEEQL YRVARDMGVT FITSSQRPAL IPFHSLELRL1320
 1321 IDGEGNWELR SIEQTTE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle