YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24421087
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	150	0.82
Transmembrane Helix	151	167	0.75
Non-Cytoplasmic	168	182	0.73
Transmembrane Helix	183	201	0.89
Cytoplasmic	202	208	0.63
Transmembrane Helix	209	228	0.90
Non-Cytoplasmic	229	259	0.87
Transmembrane Helix	260	282	0.86
Cytoplasmic	283	288	0.90
Transmembrane Helix	289	311	0.92
Non-Cytoplasmic	312	345	0.88
Transmembrane Helix	346	368	0.84
Cytoplasmic	369	382	0.83
Transmembrane Helix	383	404	0.75
Non-Cytoplasmic	405	416	0.56
Transmembrane Helix	417	436	0.91
Cytoplasmic	437	444	0.50
Transmembrane Helix	445	464	0.71
Non-Cytoplasmic	465	475	0.59
Transmembrane Helix	476	503	0.82
Cytoplasmic	504	662	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRTVSDGGE DFDGDVSSQP GSRRHTDSNS THHHHGYKVG FPPVKGLFAE FADGVKETFF  60
   61 ADDPLREYKD QPRSKKLWLS LVHLFPVLDW GRSYTFGKFK GDLVAGLTIA SLCIPQDIGY 120
  121 AKLANLQPHV GLDSSFVPPL IYALMGSSRD IAIGPVAVVS LLLGTLLQEE IDPVKNPLEY 180
  181 SRLAFTATFF AGITQAMLGF FRLGFIIEFL SHAAIVGFMA GAAITIALQQ LKGLLGIAKF 240
  241 TKKSDIISVM ESVWGNVHHG WNWQTILIGS SFLAFLLTTK YIAKKNKKLF WVSAIAPLIS 300
  301 VVISTFCVYI TRADKQGVAI VKNIKQGINP PSFHLIYWSG PYLAKGFRIG VVSGMVALTE 360
  361 AIAIGRTFAG MKDYQIDGNK EMVALGTMNV VGSMTSCYVA TGSFSRSAVN YMAGCKTAVS 420
  421 NVVMAIVVML TLLLITPLFK YTPNAILASI IINAVVNLVD YETAYLIWKV DKMDFVALLG 480
  481 AFFGVVFASV EYGLLIAVAI SLGKILLQVT RPRTALLGNL PRTTIYRNVE QYPEAAKVPG 540
  541 IMIVRVDSAV YFTNSNYVKE RILRWLRDEE DQQQEQKLYK TEFLIVELSA VTDIDTSGIH 600
  601 ALEELLKALE KRKIQLILAN PGPAVIQKLR SAKFTELIGD DKIFLSVVDA VKKFAPKSAL 660
  661 NV