YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vmat-PE, Vmat-PC...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	139	0.91
Transmembrane Helix	140	163	0.79
Non-Cytoplasmic	164	238	0.83
Transmembrane Helix	239	258	0.58
Cytoplasmic	259	265	0.60
Transmembrane Helix	266	287	0.89
Non-Cytoplasmic	288	295	0.55
Transmembrane Helix	296	316	0.75
Cytoplasmic	317	327	0.85
Transmembrane Helix	328	349	0.91
Non-Cytoplasmic	350	357	0.81
Transmembrane Helix	358	378	0.94
Cytoplasmic	379	398	0.89
Transmembrane Helix	399	418	0.95
Non-Cytoplasmic	419	437	0.89
Transmembrane Helix	438	456	0.93
Cytoplasmic	457	464	0.75
Transmembrane Helix	465	485	0.92
Non-Cytoplasmic	486	490	0.60
Transmembrane Helix	491	516	0.70
Cytoplasmic	517	524	0.73
Transmembrane Helix	525	546	0.90
Non-Cytoplasmic	547	553	0.70
Transmembrane Helix	554	577	0.86
Cytoplasmic	578	610	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSSTDAGNG GPRKHTQSTA PQKQSEISET TSFTVNANTT TNSQQQQIPG GPASNTPSKN  60
   61 PFKQQLDSNQ QNGNMEPDCG IMGVGKEPPV PPPPTYQSQT YAGRQAPPPA DQYREEDPRA 120
  121 AGSWAAAKSW MVSWRGSNRL VLVIVAIALL LDNMLLTTVV PIIPEFLYDI RHPDAPLDSF 180
  181 PRTPLTSNVP PPPTPCPCNK DGSEAAPLEI STISPEENET YYRELEERHN ELVGETVEVG 240
  241 LLFASKAFVQ LLVNPIVGPL THRIGYSIPM FAGFVIMFLS TIIFAFGRSY LVLFVARALQ 300
  301 GIGSSCSSVS GMGMLADRFT DDKERGNAMG IALGGLALGV LIGPPFGGVM YEFVGKSAPF 360
  361 LILAALALGD GLLQLFMLQP SIQKAETEPP SLKSLISDPY ILIAAGAITF ANMGIAMLEP 420
  421 SLPLWMVDNM GATRWEQGVA FLPASISYLI GTNLFGPLGH KIGRWFAACL GLIIIGGCLI 480
  481 FIPMATSITH LIIPNAGLGF AIGMVDSSMM PELGYLVDIR HSAVYGSVYA LGDVAFCVGF 540
  541 AVGPALSGSL VKSIGFEWML FGIAILCFMY APLLTLLKNP PTSDEKKSLI YGRDRAQVRY 600
  601 VTYQNYEEDE