YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28317200
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.89
Transmembrane Helix	35	55	0.92
Non-Cytoplasmic	56	103	0.86
Transmembrane Helix	104	127	0.85
Cytoplasmic	128	138	0.68
Transmembrane Helix	139	158	0.92
Non-Cytoplasmic	159	164	0.69
Transmembrane Helix	165	183	0.94
Cytoplasmic	184	193	0.71
Transmembrane Helix	194	224	0.59
Non-Cytoplasmic	225	231	0.63
Transmembrane Helix	232	253	0.88
Cytoplasmic	254	260	0.84
Transmembrane Helix	261	283	0.87
Non-Cytoplasmic	284	290	0.83
Transmembrane Helix	291	310	0.94
Cytoplasmic	311	321	0.90
Transmembrane Helix	322	348	0.89
Non-Cytoplasmic	349	382	0.94
Transmembrane Helix	383	403	0.93
Cytoplasmic	404	410	0.91
Transmembrane Helix	411	428	0.92
Non-Cytoplasmic	429	433	0.58
Transmembrane Helix	434	454	0.89
Cytoplasmic	455	511	0.92
Transmembrane Helix	512	531	0.94
Non-Cytoplasmic	532	797	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSEECVVAFQ IGYNFRVTGW NWDMNRTPKM LNSKVAGYSS LITFAILLIA WLAGFSSRLF  60
   61 AVIRFESIIH EFDPWFNYRA TAYMVQNGWY NFLNWFDERA WYPLGRIVGG TVYPGLMITS 120
  121 GGIHWLLHVL NIPVHIRDIC VFLAPIFSGL TSISTYLLTK ELWSAGAGLF AASFIAIVPG 180
  181 YISRSVAGSY DNEGIAIFAL QFTYFLWVRS VKTGSVFWSA AAALSYFYMV SAWGGYVFII 240
  241 NLIPLHVFVL LIMGRYSPRL LTSYSTFYIL GLLFSMQIPF VGFQPIRTSE HMAALGVFVL 300
  301 LMAVATLRHL QSVLSRNEFR KLFIVGGLLV GVGVFVAVVV LTMLGVVAPW SGRFYSLWDT 360
  361 GYAKIHIPII ASVSEHQPTT WFSFFFDLHI LVCAFPVGVW YCIKQINDER VFVVLYAISA 420
  421 VYFAGVMVRL MLTLTPVVCM LAGVAFSGLL DVFLQEDSSK RMGTAISAAT EVDEAEDSIE 480
  481 KKTLYDKAGK LKHRTKHDAQ QDTGVSSNLK SIVILAVLML LMMFAVHCTW VTSNAYSSPS 540
  541 IVLAFHNSQD GSRNILDDFR EAYYWLSQNT ADDARVMSWW DYGYQIAGMA NRTTLVDNNT 600
  601 WNNSHIALVG KAMSSTEEKS YEIMTSLDVD YVLVIFGGVI GYSGDDINKF LWMVRIAEGE 660
  661 HPKDIKESDY FTDRGEFRVD AEGAPALLNC LMYKLSYYRF GELKLDYRGP SGYDRTRNAV 720
  721 IGNKDFDLTY LEEAYTTEHW LVRIYRVKKP HEFNRPSLKT KERTIPPANF ISRKNSKRRK 780
  781 GYIRNRPVVV KGKRTLK