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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28317109
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLLSGSAAAT AAAAASAAVM MAKSPQRDDA APKELQDRRK SMSWKTFNLK RQLSKVNMKI  60
   61 GGLNVNTDME SLKNSSIFYT PKEVSPEAAT PPATEEEATP EGKEDESLDD GEMATNAGAA 120
  121 AAASPSPAVR GKFRSSTTDS PDEGASSSIA SGIRRVDFEQ PAGVEVERPN NLPLADAPAP 180
  181 LKPARQKFKE KSRDQRLLSV PNIKYQPRDS RGGARNLKND VSPLMGGGGG GGGVVGASSG 240
  241 IGGSVAGGKK IHKLDGTFSR SRSSSMSSID MSSSESVTCL AFIESYAKRN DILTLVPTLW 300
  301 IGTSFGSILT LFITMPERDV RKSQPVLITI NGGPVVRLKG SITSMSFLDS YGSIIPYTFE 360
  361 TWRDEKRDNK DRTPTKSSSR TSPTFTPTTA NTLSNTSVAG GASAGGGAGG GGGAGGGAAS 420
  421 GGAAAGGPAG GGAGAGSAAG AAGGVGSGVT SGGGMSSSSA SSSGISGSVS TGLETLTDRQ 480
  481 YIVIASEKQT KVFDVANQCC INRIQLSEMD FAVKAETITM KDGSCLATYL SNGHLMVHSL 540
  541 PSLKLLLDTD FLPLMELSFQ TKCKQGIVDP MLSIWGQQII VHEDTTQISK IFCFSHKGHG 600
  601 LYMASPTEIQ KFTISSEFCQ FILEMMGELY TVHEMPEQPK EGFFKGLFGG GAKLLDREEL 660
  661 FGEQSGKPNR SVARHIPGPN LEQLGQRAST AASEISRAHQ LAMERGEKLN LLEERAERMA 720
  721 NTAQDFSGTA HQLMLKYKDK KWYQL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle