YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28316902
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELCIATKSK IETAQSSMPQ SSQCSSSSNC RNYQKKCHQN QTNTQVQSTQ RSNCSSHSDR  60
   61 DHLTNQQKQQ NQRTNSATAA SAAAATLSES TRCNIIISSS SSSSSSTKSS KNIREPSSSS 120
  121 STQLNTLYSL LVLLIVGLAT ATASPSPSPS HAPFGRESRR DALLAYYKRA HLPQSSSSGI 180
  181 SLGHKYHLLH DANGLDFDEL TPTASSVSAL SRAERFRLRK RSATPTTPAT AAGVTSLDVA 240
  241 TAAAAATDAA AKDAGSGKKP EEKCEPKVLE TLPDEPFYDY TDIAEDAARQ FIEFLSGKFP 300
  301 NANTPIAIDE PTRAEVSRRA NGIASYALNE DDNLLAFAIA APSIHTVVVK FRDNVTIPPD 360
  361 QVHNKAYLGS YWRELGAAWN STDGTQEWGA PFRDCNLLTR RWLWPSHILQ RAQDQSCGGC 420
  421 LHCRRRGCVQ RWPGGSFRSP SWLRSEYDLL PAHREQTRRH PGCVHLSVPG ILLPAQFHAP 480
  481 GIPWRSSGTV RGLRQLLVHS VSRRMH

Type	Start	End	Confidence
Cytoplasmic	1	123	0.81
Transmembrane Helix	124	143	0.81
Non-Cytoplasmic	144	506	0.95