YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRLB_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGDIHLCSM ILGKNHLIFL YFANLFGSTL SFLATIITIV FYLVKKYIQN KSFRENPHQY  60
   61 CHQHQYFDSS KLNEINNSGV GSYSSTPISI QNNNNKNNNL PKQKNNEKQP LINKNHNNYC 120
  121 NYSTSATSSS SSSSSFSSTN SGSSYEYQQP QKNQQTLSSS DKNNTIPSTN TKYEIELSIP 180
  181 QFKGNKCGPN CLLFSNIPQI KNALEQKKNP KKIDTLIFYL SISDFIAVSG IIIEQLIIIF 240
  241 NKEISKSIGF CIGERVSIHF GLLATLFWSN CIAYYLLRET YELKPYNIRF VYFHIVCWGM 300
  301 ALIGVASLFF SKIITVSNID QGGSWCSVSS SYQLYFWVIP LFVSFTWNLI CYCLIYRKFN 360
  361 KIIGIYGIQS VQIKTIIIRK LSFYLLAFLI TWVWDVINNS IFLYEGKCPP FALWILQEFF 420
  421 SSGYGFFNSL AYAVTTRFYS RK

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.94
Transmembrane Helix	20	44	0.92
Cytoplasmic	45	215	0.99
Transmembrane Helix	216	238	0.93
Non-Cytoplasmic	239	255	0.93
Transmembrane Helix	256	277	0.92
Cytoplasmic	278	289	0.94
Transmembrane Helix	290	314	0.88
Non-Cytoplasmic	315	333	0.95
Transmembrane Helix	334	356	0.94
Cytoplasmic	357	375	0.98
Transmembrane Helix	376	396	0.90
Non-Cytoplasmic	397	414	0.88
Transmembrane Helix	415	436	0.83
Cytoplasmic	437	442	0.73