YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DEK1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.90
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	57	0.84
Transmembrane Helix	58	83	0.83
Non-Cytoplasmic	84	94	0.75
Transmembrane Helix	95	118	0.91
Cytoplasmic	119	127	0.88
Transmembrane Helix	128	151	0.91
Non-Cytoplasmic	152	161	0.78
Transmembrane Helix	162	180	0.94
Cytoplasmic	181	235	0.93
Transmembrane Helix	236	257	0.92
Non-Cytoplasmic	258	263	0.82
Transmembrane Helix	264	286	0.89
Cytoplasmic	287	292	0.89
Transmembrane Helix	293	314	0.93
Non-Cytoplasmic	315	319	0.76
Transmembrane Helix	320	340	0.92
Cytoplasmic	341	617	0.99
Transmembrane Helix	618	636	0.94
Non-Cytoplasmic	637	652	0.82
Transmembrane Helix	653	674	0.90
Cytoplasmic	675	687	0.92
Transmembrane Helix	688	707	0.92
Non-Cytoplasmic	708	712	0.74
Transmembrane Helix	713	735	0.87
Cytoplasmic	736	760	0.93
Transmembrane Helix	761	782	0.95
Non-Cytoplasmic	783	811	0.93
Transmembrane Helix	812	834	0.91
Cytoplasmic	835	843	0.76
Transmembrane Helix	844	863	0.95
Non-Cytoplasmic	864	878	0.90
Transmembrane Helix	879	900	0.93
Cytoplasmic	901	911	0.83
Transmembrane Helix	912	933	0.94
Non-Cytoplasmic	934	938	0.84
Transmembrane Helix	939	961	0.92
Cytoplasmic	962	971	0.88
Transmembrane Helix	972	992	0.92
Non-Cytoplasmic	993	1001	0.79
Transmembrane Helix	1002	1026	0.76
Cytoplasmic	1027	1046	0.85
Transmembrane Helix	1047	1068	0.60
Non-Cytoplasmic	1069	1069	0.39
Transmembrane Helix	1070	1095	0.79
Cytoplasmic	1096	1228	0.56
Transmembrane Helix	1229	1248	0.43
Non-Cytoplasmic	1249	2151	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGDERGVLL ACVISGTLFT VFGSGSFWIL WAVNWRPWRL YSWIFARKWP KVLQGPQLDI  60
   61 LCGVLSLFAW IVVVSPIAIL IGWGSWLIVI LDRHIIGLAI IMAGTALLLA FYSIMLWWRT 120
  121 QWQSSRAVAL LLLLGVALLC AYELCAVYVT AGAHASQQYS PSGFFFGVSA IALAINMLFI 180
  181 CRMVFNGNGL DVDEYVRRAY KFAYSDCIEV GPVACLPEPP DPNELYPRQT SRASHLGLLY 240
  241 LGSLVVLLAY SVLYGLTARE SRWLGGITSA AVIVLDWNIG ACLYGFKLLQ NRVLALFVAG 300
  301 ISRLFLICFG IHYWYLGHCI SYIFVASVLS GAAVSRHLSI TDPSAARRDA LQSTVIRLRE 360
  361 GFRRKEQNSS SSSSDGCGSS IKRSSSIDAG HTGCTNEANR TAESCTADNL TRTGSSQEGI 420
  421 NSDKSEESGR PSLGLRSSSC RSVVQEPEAG TSYFMDKVSD QNNTLVVCSS SGLDSQGYES 480
  481 STSNSANQQL LDMNLALAFQ DQLNNPRIAS ILKKKAKEGD LELTNLLQDK GLDPNFAVML 540
  541 KEKNLDPTIL ALLQRSSLDA DRDHRDNTDI TIIDSNSVDN TLPNQISLSE ELRLRGLEKW 600
  601 LKLSRLLLHH VAGTPERAWG LFSLVFILET IIVAIFRPKT ITIINSSHQQ FEFGFSVLLL 660
  661 SPVVCSIMAF LRSLQVEEMA LTSKSRKYGF VAWLLSTSVG LSLSFLSKSS VLLGISLTVP 720
  721 LMAACLSIAV PIWMHNGYQF WVPQLSCGDQ ARDLRSPRIK GFILWICVVL FAGSVISLGA 780
  781 IISAKPLDDL KYKLFSAREN NVTSPYTSSV YLGWAMSSGI ALVVTAILPI VSWFATYRFS 840
  841 HSSAVCLMIF SVVLVAFCGT SYLEVVKSRD DQLPTKGDFL AALLPLACIP ALLSLCCGMV 900
  901 KWKDDCWILS RGVYVFFSIG LLLLFGAIAA VIAVKPWTIG VSFLLVLFLM VVTIGVIHLW 960
  961 ASNNFYLTRK QTSFVCFLAL LLGLAAFLLG WHQDKAFAGA SVGYFTFLSL LAGRALAVLL1020
 1021 SPPIVVYSPR VLPVYVYDAH ADCGKNVSAA FLVLYGIALA TEGWGVVASL IIYPPFAGAA1080
 1081 VSAITLVVAF GFAVSRPCLT LEMMEVAVRF LSKDTIVQAI SRSATKTRNA LSGTYSAPQR1140
 1141 SASSAALLVG DPSAMRDKAG NFVLPRDDVM KLRDRLRNEE RVAGSIFYKM QCRKGFRHEP1200
 1201 PTNVDYRRDM CAHARVLALE EAIDTEWVYM WDKFGGYLLL LLGLTAKAER VQDEVRLRLF1260
 1261 LDSIGFSDLS ARKISKWKPE DRRQFEIIQE SYLREKEMEE ESLMQRREEE GRGKERRKAL1320
 1321 LEKEERKWKE IEASLIPSIP NAGSREAAAM AAAIRAVGGD SVLEDSFARE RVSGIARRIR1380
 1381 TAQLERRAQQ TGISGAVCVL DDEPMISGKH CGQMDSSVCQ SQKISFSVTA MIQSDSGPVC1440
 1441 LFGTEFQKKV CWEILVAGSE QGIEAGQVGL RLITKGERQT TVAREWYIGA TSITDGRWHT1500
 1501 VTITIDADAG EATCYIDGGF DGYQNGLPLS IGSAIWEQGA EVWLGVRPPI DVDAFGRSDS1560
 1561 DGVESKMHIM DVFLWGKCLS EEEAASLHAA IGMADLDMID LSDDNWQWTD SPPRVDGWDS1620
 1621 DPADVDLYDR DDVDWDGQYS SGRKRRSGRD FVMSVDSFAR RHRKPRMETQ EDINQRMRSV1680
 1681 ELAVKEALSA RGDKQFTDQE FPPNDRSLFV DTQNPPSKLQ VVSEWMRPDS IVKENGSDSR1740
 1741 PCLFSGDANP SDVCQGRLGD CWFLSAVAVL TEVSRISEVI ITPEYNEEGI YTVRFCIQGE1800
 1801 WVPVVIDDWI PCESPGKPAF ATSRKLNELW VSMVEKAYAK LHGSYEALEG GLVQDALVDL1860
 1861 TGGAGEEIDL RSAQAQIDLA SGRLWSQLLR FKQEGFLLGA GSPSGSDVHV SSSGIVQGHA1920
 1921 YSVLQVREVD GHRLVQIRNP WANEVEWNGP WSDSSPEWTD RMKHKLKHVP QSKEGIFWMS1980
 1981 WQDFQIHFRS IYVCRVYPRE MRYSVNGQWR GYSAGGCQDY SSWHQNPQFR LRATGSDASL2040
 2041 PIHVFITLTQ GVGFSRTTPG FRNYQSSHDS QLFYIGLRIL KTRGRRAAYN IFLHESVGGT2100
 2101 DYVNSREISC EMVLDPDPKG YTIVPTTIHP GEEAPFVLSV FTKASIVLEA L