YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERDL4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	65	0.89
Non-Cytoplasmic	66	87	0.86
Transmembrane Helix	88	109	0.86
Cytoplasmic	110	116	0.78
Transmembrane Helix	117	136	0.90
Non-Cytoplasmic	137	144	0.74
Transmembrane Helix	145	165	0.90
Cytoplasmic	166	175	0.78
Transmembrane Helix	176	195	0.93
Non-Cytoplasmic	196	201	0.75
Transmembrane Helix	202	221	0.97
Cytoplasmic	222	280	0.98
Transmembrane Helix	281	300	0.93
Non-Cytoplasmic	301	320	0.77
Transmembrane Helix	321	341	0.94
Cytoplasmic	342	347	0.95
Transmembrane Helix	348	370	0.93
Non-Cytoplasmic	371	385	0.84
Transmembrane Helix	386	409	0.86
Cytoplasmic	410	420	0.76
Transmembrane Helix	421	440	0.86
Non-Cytoplasmic	441	452	0.65
Transmembrane Helix	453	472	0.94
Cytoplasmic	473	488	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRDDNTEE GRNDLRRPFL HTGSWYRMGS RQSSMLESSQ VIRDSSISVL ACVLIVALGP  60
   61 IQFGFTCGYS SPTQAAITKD LGLTVSEYSV FGSLSNVGAM VGAIASGQIA EYVGRKGSLM 120
  121 IAAIPNIIGW LSISFAKDTS FLYMGRLLEG FGVGIISYTV PVYIAEIAPQ TMRGALGSVN 180
  181 QLSVTIGIML AYLLGLFVPW RILAVLGVLP CTLLIPGLFF IPESPRWLAK MGLTDDFETS 240
  241 LQVLRGFETD ITVEVNEIKR SVASSSKRSA VRFVDLKRRR YYFPLMVGIG LLALQQLGGI 300
  301 NGVLFYSSTI FESAGVTSSN VATFGVGVVQ VVATGIATWL VDKAGRRLLL MISSIGMTIS 360
  361 LVIVAVAFYL KEFVSPDSNM YNILSMVSVV GVVAMVISCS LGMGPIPWLI MSEILPVNIK 420
  421 GLAGSIATLL NWFVSWLVTM TANMLLAWSS GGTFTLYALV CGFTVVFVSL WVPETKGKTL 480
  481 EEIQALFR