YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB34G_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	542	0.56
Transmembrane Helix	543	563	0.91
Cytoplasmic	564	577	0.44
Transmembrane Helix	578	602	0.83
Non-Cytoplasmic	603	619	0.44
Transmembrane Helix	620	649	0.73
Cytoplasmic	650	659	0.42
Transmembrane Helix	660	680	0.84
Non-Cytoplasmic	681	685	0.46
Transmembrane Helix	686	708	0.91
Cytoplasmic	709	716	0.46
Transmembrane Helix	717	733	0.31
Non-Cytoplasmic	734	770	0.63
Transmembrane Helix	771	795	0.91
Cytoplasmic	796	1195	0.71
Transmembrane Helix	1196	1218	0.88
Non-Cytoplasmic	1219	1231	0.67
Transmembrane Helix	1232	1255	0.83
Cytoplasmic	1256	1311	0.46
Transmembrane Helix	1312	1332	0.90
Non-Cytoplasmic	1333	1339	0.59
Transmembrane Helix	1340	1361	0.91
Cytoplasmic	1362	1369	0.73
Transmembrane Helix	1370	1388	0.78
Non-Cytoplasmic	1389	1425	0.89
Transmembrane Helix	1426	1445	0.95
Cytoplasmic	1446	1453	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRDEDLVR TMSGRGSLGS TSHRSLAGAA SKSFRDVFAP PTDDVFGRSD RREEDDVELR  60
   61 WAALERLPTY DRLRKGMLPQ TMVNGKIGLE DVDVTNLAPK EKKHLMEMIL KFVEEDNEKF 120
  121 LRRLRERTDR VGIEVPKIEV RYENLSVEGD VRSASRALPT LFNVTLNTIE SILGLFHLLP 180
  181 SKKRKIEILK DISGIIKPSR MTLLLGPPSS GKTTLLQALA GKLDDTLQMS GRITYCGHEF 240
  241 REFVPQKTCA YISQHDLHFG EMTVRESLDF SGRCLGVGTR YQLLTELSRR EREAGIKPDP 300
  301 EIDAFMKSIA ISGQETSLVT DYVLKLLGLD ICADTLVGDV MRRGISGGQR KRLTTGEMLV 360
  361 GPATALFMDE ISTGLDSSTT FQICKFMRQL VHIADVTMVI SLLQPAPETF ELFDDIILLS 420
  421 EGQIVYQGSR DNVLEFFEYM GFKCPERKGI ADFLQEVTSK KDQEQYWNRR EHPYSYVSVH 480
  481 DFSSGFNSFH AGQQLASEFR VPYDKAKTHP AALVTQKYGI SNKDLFKACF DREWLLMKRN 540
  541 SFVYVFKTVQ ITIMSLIAMT VYFRTEMHVG TVQDGQKFYG ALFFSLINLM FNGMAELAFT 600
  601 VMRLPVFFKQ RDFLFYPPWA FALPGFLLKI PLSLIESVIW IALTYYTIGF APSAARFFRQ 660
  661 LLAYFCVNQM ALSLFRFLGA LGRTEVIANS GGTLALLVVF VLGGFIISKD DIPSWLTWCY 720
  721 YTSPMMYGQT ALVINEFLDE RWGSPNNDTR INAKTVGEVL LKSRGFFTEP YWFWICIGAL 780
  781 LGFTVLFNFC YIIALMYLNP LGNSKATTVV EEGKDKHKGS HSGTGGSVVE LTSTSSHGPK 840
  841 KGMVLPFQPL SLAFNNVNYY VDMPAEMKAQ GVEGDRLQLL RDVGGAFRPG VLTALVGVSG 900
  901 AGKTTLMDVL AGRKTGGYVE GSINISGYPK NQATFARVSG YCEQNDIHSP HVTVYESLIY 960
  961 SAWLRLSADI DTKTREMFVE EVMELVELKP LRNSIVGLPG VDGLSTEQRK RLTIAVELVA1020
 1021 NPSIIFMDEP TSGLDARAAA IVMRTVRNTV DTGRTVVCTI HQPSIDIFES FDELLLMKRG1080
 1081 GQVIYAGTLG HHSQKLVEYF EAIEGVPKIK DGYNPATWML DVTTPSMESQ MSVDFAQIFV1140
 1141 NSSVNRRNQE LIKELSTPPP GSNDLYFRTK YAQPFSTQTK ACFWKMYWSN WRYPQYNAIR1200
 1201 FLMTVVIGVL FGLLFWQTGT KIEKEQDLNN FFGAMYAAVL FLGATNAATV QPAVAIERTV1260
 1261 FYREKAAGMY SAIPYAISQV AVEIMYNTIQ TGVYTLILYS MIGYDWTVVK FFWFYYYMLT1320
 1321 CFVYFTLYGM MLVALTPNYQ IAGICLSFFL SFWNLFSGFL IPRPQIPIWW RWYYWASPVA1380
 1381 WTLYGIITSQ VGDRDSIVHI TGVGDMSLKT LLKNGFGFDY DFLPVVAVVH IAWILIFLFA1440
 1441 FAYGIKFLNF QRR