YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1582002, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.93
Transmembrane Helix	130	153	0.89
Non-Cytoplasmic	154	197	0.86
Transmembrane Helix	198	218	0.77
Cytoplasmic	219	228	0.71
Transmembrane Helix	229	248	0.50
Non-Cytoplasmic	249	255	0.43
Transmembrane Helix	256	277	0.91
Cytoplasmic	278	389	0.56
Transmembrane Helix	390	414	0.89
Non-Cytoplasmic	415	744	0.80
Transmembrane Helix	745	768	0.80
Cytoplasmic	769	779	0.69
Transmembrane Helix	780	802	0.85
Non-Cytoplasmic	803	818	0.73
Transmembrane Helix	819	839	0.78
Cytoplasmic	840	862	0.72
Transmembrane Helix	863	887	0.87
Non-Cytoplasmic	888	917	0.77
Transmembrane Helix	918	937	0.67
Cytoplasmic	938	946	0.61
Transmembrane Helix	947	971	0.88
Non-Cytoplasmic	972	1194	0.74
Transmembrane Helix	1195	1218	0.77
Cytoplasmic	1219	1233	0.70
Transmembrane Helix	1234	1250	0.74
Non-Cytoplasmic	1251	1261	0.69
Transmembrane Helix	1262	1282	0.90
Cytoplasmic	1283	1310	0.77
Transmembrane Helix	1311	1337	0.87
Non-Cytoplasmic	1338	1394	0.72
Transmembrane Helix	1395	1415	0.51
Cytoplasmic	1416	1434	0.50
Transmembrane Helix	1435	1460	0.85
Non-Cytoplasmic	1461	1517	0.55
Transmembrane Helix	1518	1537	0.78
Cytoplasmic	1538	1548	0.63
Transmembrane Helix	1549	1572	0.90
Non-Cytoplasmic	1573	1578	0.61
Transmembrane Helix	1579	1602	0.83
Cytoplasmic	1603	1631	0.58
Transmembrane Helix	1632	1648	0.62
Non-Cytoplasmic	1649	1649	0.27
Transmembrane Helix	1650	1672	0.73
Cytoplasmic	1673	1685	0.44
Transmembrane Helix	1686	1703	0.64
Non-Cytoplasmic	1704	1736	0.55
Transmembrane Helix	1737	1762	0.85
Cytoplasmic	1763	1976	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRSARLLAP PGPDSFKPFT PESLANIERR IAESKLKKPP KADGSHREDD EDSKPKPNSD  60
   61 LEAGKSLPFI YGDIPQGLVA VPLEDFDPYY LTQKTFVVLN RGKTLFRFSA TPALYILSPF 120
  121 NLIRRIAIKI LIHSVFSMII MCTILTNCVF MTFSNPPEWS KNVEYTFTGI YTFESLVKII 180
  181 ARGFCIDGFT FLRDPWNWLD FSVIMMAYVT EFVDLGNVSA LRTFRVLRAL KTISVIPGLK 240
  241 TIVGALIQSV KKLSDVMILT VFCLSVFALI GLQLFHGNLS KQCVVWPINF NESYLENGTR 300
  301 GFDWEEYINN KTNFYMVPGM LEPLLCGNSS DAGQCEGFQC SKAGRNPNYG YTSFDTFSWA 360
  361 FLALFRLMTQ DYWENLYQLT LRAAGKTYMI FFVLVIFVGS FYPVNLILAV VAMAYEEQNQ 420
  421 ATLEEAEQKE AEFKAMLEQL KKQQEEAQAA AMATSAGTVS EDAIEEEGED GVGSPRSSSE 480
  481 LSKLSSKSAK ERRNRRKKRK QKELSEGEEK GDPEKVFKSE SEYGMRRKAF RLPDNRIGRK 540
  541 FSIMNQSLLS IPGSPFLSRH NSKSSIFSFG DPSVRDPGSE NEFADDEHST VEESEGRRDS 600
  601 LFIPIRARER RSSYSGYSGY SQCSRSSRIS PACAQREANS TVDCNGVVSL IGPGSHIGRL 660
  661 LLRQRLRWKL RRKALDSFSF YGPTRLLRTE GQNQQHNERG HKHASEELEE SQRKCPPCWY 720
  721 KFANTFLIWE CHPYWIKLKE IVNLIVMDPF VDLAITICIV LNTLFMAMEH HPMTPQFEHV 780
  781 LAVGNLVFTG IFTAEMFLKL IAMDPYYYFQ EGWNIFDGFI VSLSLMELSL ADVEGLSVLR 840
  841 SFRLLRVFKL AKSWPTLNML IKIIGNSVGA LGNLTLVLAI IVFIFAVVGM QLFGKSYKEC 900
  901 VCKINQECKL PRWHMNDFFH SFLIVFRVLC GEWIETMWDC MEVAGQAMCL IVFMMVMVIG 960
  961 NLVVLNLFLA LLLSSFSADN LAATDDDGEM NNLQISVIRI KKGVAWTKVK VHAFMQAHFK1020
 1021 QREADEVKPL DELYEKKANC IANHTGVDIH RNGDFQKNGN GTTSGIGSSV EKYIIDEDHM1080
 1081 SFINNPNLTV RVPIAVGESD FENLNTEDVS SESDPEGSKD KLDDTSSSEG STIDIKPEVE1140
 1141 EVPVEQPEEY LDPDACFTEG CVQRFKCCQV NIEEGLGKSW WILRKTCFLI VEHNWFETFI1200
 1201 IFMILLSSGA LAFEDIYIEQ RKTIRTILEY ADKVFTYIFI LEMLLKWTTY GFVKFFTNAW1260
 1261 CWLDFLIVAV SLVSLIANAL GYSELGAIKS LRTLRALRPL RALSRFEGMR VVVNALVGAI1320
 1321 PSIMNVLLVC LIFWLIFSIM GVNLFAGKYH YCFNETSEIR FEIDIVNNKT DCEKLMEGNS1380
 1381 TEIRWKNVKI NFDNVGAGYL ALLQVATFKG WMDIMYAAVD SRKPDEQPDY EGNIYMYIYF1440
 1441 VIFIIFGSFF TLNLFIGVII DNFNQQKKKF GGQDIFMTEE QKKYYNAMKK LGSKKPQKPI1500
 1501 PRPLNKIQGI VFDFVTQQAF DIVIMMLICL NMVTMMVETD TQSKQMENIL YWINLVFVIF1560
 1561 FTCECVLKMF ALRHYYFTIG WNIFDFVVVI LSIVGMFLAD IIEKYFVSPT LFRVIRLARI1620
 1621 GRILRLIKGA KGIRTLLFAL MMSLPALFNI GLLLFLVMFI FSIFGMSNFA YVKHEAGIDD1680
 1681 MFNFETFGNS MICLFQITTS AGWDGLLLPI LNRPPDCSLD KEHPGSGFKG DCGNPSVGIF1740
 1741 FFVSYIIISF LIVVNMCIAI ILENFSVATE ESADPLSEDD FETFYEIWEK FDPDATQFIE1800
 1801 YCKLADFADA LEHPLRVPKP NTIELIAMDL PMVSGDRIHC LDILFAFTKA VLGDSGELDI1860
 1861 LRQQMEERFV ASNPSKVSYE AYHTTLRRNE EEVSAVVLQR AYRGHLARRG FICRKMASNK1920
 1921 LENGGTHRDK KESTPSTASL PSYDSVTKPD KEKQQRAEEG RRERAKRQKE VRESKC