YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27820039
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNKIINMPA ARIGTQWLVI LCVAMAASGT NLDSGICPVA GDSGCRGNPP DQARYDNYRI  60
   61 YNVEFENQEQ IELFQKLEEQ SDSLTFIGHA REVGQKLSIL VAAHRVADIA DLLKTYKVKH 120
  121 RVLTYNFQEK IDRNLAEVQP ESIDASQLDW QHFFHLKTIY EWLDKMVEKY PNRVTVLDMG 180
  181 SSTQGNAIKG VKLTSNANNK AIFIESGIHA REWISPAAAT YIINQLLTSQ DPKVQQLAQD 240
  241 YNWIIFPCVN PDGYKYTFEH DRMWRKNRQL FGTCRGVDLN RNYPDHWNST GSSSDPTRYD 300
  301 FAGPSAGSEL ETKRLIDFIR ANAGKEQIKT YIALHSYSQM LMFPYGYTKE RVSNYDDLQE 360
  361 FGKKASAAIK AESGRDYVSG SLFETIYPSS GGSMDWAHSE AGIPIAYTFE LRGPPDSQDL 420
  421 FILPAVEIQP TASEAFTAIR AIVEAAAEKG YYK

Type	Start	End	Confidence
Signal Peptide	1	29	0.88
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	453	0.99