YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAP14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKMKLWRR VSGAIKDKLS LITATDEKFT AAVIKATSHN DVSMDIENVQ FIYRYIQSNP  60
   61 SSFKPIIRAV SLRVEHTRNW TVALKCLMLL HGLFFSGIMT VDSIGRLPFD LSGFGRRKSR 120
  121 FSRTGRFNIF VRAYFMFLDE RSILYYNKNM IRLEIIVKMQ RIVDSLMRIK PIGETPLVIE 180
  181 AMEYVISEVV LINGHICRGF AGFLSDVQSN MLEISSAEAD LAMNIVAKSL SQREKLFKYF 240
  241 EFCRGFGVTN AQETSNILRI TESQMIVLDK LLHIAPELDW KAAKVTPVTA ADMVDLVTSE 300
  301 ERSNTPSDFL TF

Type	Start	End	Confidence
Cytoplasmic	1	80	0.65
Transmembrane Helix	81	101	0.60
Non-Cytoplasmic	102	312	0.95