YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20198126, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLLQPSF LMSKTRSYAQ ILIGSWLFLT AMAIHLSLGV APLDLQQGGN SRILYVHVPA  60
   61 ARMSIIVYIA TAINTFLFLL TKHPLYLRSS GTGIEMGAFF TLFTLVTGGF RGRPMWGTFW 120
  121 VWDARLTSVF ISFLIYLGAL RFQKLPVEPA SISIRAGPID IPIIKSSVNW WNTSHQPGSI 180
  181 SRSSTSIHVP MPIPILSNFA NFPFSTRILF VLETRLPIPS FLESPITEEI EAREGIPKPS 240
  241 SLALFASMAE WLKRPT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	39	0.96
Non-Cytoplasmic	40	57	0.85
Transmembrane Helix	58	80	0.88
Cytoplasmic	81	90	0.74
Transmembrane Helix	91	110	0.90
Non-Cytoplasmic	111	120	0.75
Transmembrane Helix	121	140	0.90
Cytoplasmic	141	256	0.81